LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g02777	ATGAGACGAATGAATAAAGAAATTGAAGATGAGGTGCTTCCCAATGATATGAGTGGGGCACAATTGAATGATGAGAGTTATGGAGGAAGTGCTGGCATTGTTCTGAAGAAAGGGCCATGGACATCAACTGAAGATGATATTTTGGTGGATTATGTTAAGAAGCATGGGGAGGGGAACTGGAATGCTGTTCAGAAGCACACAGGGCTATTACGTTGCGGAAAAAGTTGTCGGCTGCGATGGGCTAATCACCTAAGGCCGAATTTAAAGAAAGGGGCGTTTACTGCAGAAGAGGAGCGGGTGATTGCTGAGCTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGTACAGATAATGAGATAAAGAACTACTGGAACACCCGGATCAAAAGGCGTCAACGGGCTGGGTTGCCCCTTTATCCTCCAGAAGTGAGTCTGCAAGCTTTGCAAGAGAGTCAGCGTAGCCAAAGCTCTGGTGGACTTAATGGTGGCAATAAAATGCATCCTGATTTCATGCAGAAAAACAGTTATGAGATGCATGGTGCTATATTTGACAGTCTGAAGGATAATCAGGGAATCTCACCTTATGTGTCTGAGCTTTCTGATATTTCTGTTTATGGCAATATGCTAAAAGGTCTTGATTCTTCTCAGTATTGTAGCTTTGTGCCACCAACATCACCTAAGCATAAGCGTCTTAAAGAGTCAACAATACCATTTATTGATTCCAGTGAAATGAAAAAAAATGGTTTATATCCGTTAGATCAAATTTGGGACAATAATTCTGATAATATTGCACAATCATTTGGAATGCAAACACCCCTTGATCCTGGTCCCGCCTCGCACAGCTCAATTTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTATGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAGCTTGATTTAGGTAGCTGGGGTTCATCTCCCCCACCTTCTTTGCTCGAGTCAGTTGATGATTTCTTTCAGTCTCCTACACCAATTAGTACACTGGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCTTTACTTTATCAGGCAAAGACTATGAGCAGTTCAAAGAACCATTGTTCTGACAAGAGTTCAAATTCTTCTACTGCAACCCCTGGTGACAGAGCTGACAGCTCTGCTTTGAATGTGTATGAGACAGAATGGGAAGATTATGCTGACCCTGTATCTCCCTTTGGTGCAACTTCAATATTGAATGAGTGCCCTGCTCTTAGAGCCAATGCGAATTCATTGGACAAACAGCTACCCGTTCAGACCTTTACTGGCAACATTCCGAAATTAGAGTCTGTTGACCAGGTTTGGACTCCTGACAGTGAAAATCAAACCTTGTCCCTGTTGAATATTACTCGTCCAGACTTCTTGCTTGCTTCAGATTGGTATGACCTAGGTTCTGGGCATGGCAAGAACCAAGCCACAACAACTGATGCTGCAACCACCCTTCTTGGGGATGATTTGGCCACTGACCATAAGCATATGACTGCTGGAACTACTAAAACTATGTTTGGAAATCCGTTCCAGCCCCTCTAA	1614	0.4368	MRRMNKEIEDEVLPNDMSGAQLNDESYGGSAGIVLKKGPWTSTEDDILVDYVKKHGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERVIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSLQALQESQRSQSSGGLNGGNKMHPDFMQKNSYEMHGAIFDSLKDNQGISPYVSELSDISVYGNMLKGLDSSQYCSFVPPTSPKHKRLKESTIPFIDSSEMKKNGLYPLDQIWDNNSDNIAQSFGMQTPLDPGPASHSSICYSHSLSNGNSSTSKPTYEAVKLELPSLQYPELDLGSWGSSPPPSLLESVDDFFQSPTPISTLESDCSSPQNSGLLDALLYQAKTMSSSKNHCSDKSSNSSTATPGDRADSSALNVYETEWEDYADPVSPFGATSILNECPALRANANSLDKQLPVQTFTGNIPKLESVDQVWTPDSENQTLSLLNITRPDFLLASDWYDLGSGHGKNQATTTDAATTLLGDDLATDHKHMTAGTTKTMFGNPFQPL	537

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g02777	537	Pfam	Myb-like DNA-binding domain	90	133	IPR001005	-
	Pumo10g02777	537	Pfam	Myb-like DNA-binding domain	37	84	IPR001005	-
	Pumo10g02777	537	SUPERFAMILY	Homeodomain-like	36	131	IPR009057	-
	Pumo10g02777	537	Gene3D	-	92	138	-	-
	Pumo10g02777	537	FunFam	MYB-related transcription factor	36	89	-	-
	Pumo10g02777	537	Gene3D	-	36	89	-	-
	Pumo10g02777	537	ProSiteProfiles	Myb-like domain profile.	35	84	IPR001005	-
	Pumo10g02777	537	CDD	SANT	39	84	IPR001005	-
	Pumo10g02777	537	CDD	SANT	92	133	IPR001005	-
	Pumo10g02777	537	MobiDBLite	consensus disorder prediction	379	399	-	-
	Pumo10g02777	537	FunFam	Transcription factor GAMYB	92	138	-	-
	Pumo10g02777	537	ProSiteProfiles	Myb-like domain profile.	85	135	IPR001005	-
	Pumo10g02777	537	SMART	sant	36	86	IPR001005	-
	Pumo10g02777	537	SMART	sant	89	137	IPR001005	-
	Pumo10g02777	537	MobiDBLite	consensus disorder prediction	156	175	-	-
	Pumo10g02777	537	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	32	84	IPR017930	-
	Pumo10g02777	537	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	85	139	IPR017930	-
	Pumo10g02777	537	MobiDBLite	consensus disorder prediction	379	401	-	-
	Pumo10g02777	537	PANTHER	TRANSCRIPTION FACTOR MYB33-RELATED	7	506	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g02777	Pumo-Chr10	53140087	53145430	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo10g02777	32	526	MYB Transcription Factor Family	AT5G06100	44.950	4.45e-125	374

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Pumo10g02777		Myb_DNA-binding	9.5e-15	CL0123