Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02758 ATGGAAGAAGGGTTGTGTCAAAACTCAGTTCCTGGTTCAGGTTTTGTTGATAAAACTAGGATTGTAGAGGCTAAACCCCTGCGTAGTTTGGCACCTGTGTTGCCAAAATCTCTTCAATCTTCTCTCTCTGGCCGGTATCCATCTGTGTTTCCTCCATTTGTTTTGTTTGAGGAACCTCAAGAGTCTCAGCCATCACCTGCTCCCATACCAGCTCCAATAAGGTCCTATAGGAACCCACTAGATGAAGAAGAAACCCGTCATGGAGCCAATGGAGAGACTTCTTCACCTATGGAGGGTCTCAATGGTAAGAGTGCCGACGATAGCCAAAAGCGTGCCGTGCCGCCTTTGAAGAGCTGCAGATCATCCCAAAAGAGGAGTAAGAAAACTAAGGAGTCACAGTTTGATTCGAGTTCTTCTGTTGGTGGTATTAGTGTGGCCAAAAGGGAAGATGGCGATCGCGAAGTGGTTAATCTTGTTCTCATGACTTATGATTCTCTTCGGAGAAGGCTCTGCCAACTCGAAGATGCCAAGGAGTTGAACACAACGATGGCAATCAAGCGGGCGGATTTAAGAGCAAGCAATGCGATGACAGGCAAAGCGTTTCGAACAAACACGAGGAGGAGAGTAGGAGCAGTGCCTGGGGTTGAGATTGGGGACATTTTCTTTTTGCGGATGGAAATGTGTCTTGTGGGTTTACATGGCCAGTCAATGAGCGGAATTGACTACATGACTATCAAGGATGAGCTTCAGGAGGAACCGGTGGCTTTAAGCATTGTTTCGTCAGGAGTATATGATAATGATGCAGAGGATAATGATGTTTTAATTTATAGTGGTCAGGGTGAGAATTTCAACAAGAAAGATAAGCACGTGATTGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTAGATAGAAGTTCACGACGACACAATGAAGTAAGAGTCATCCGGGGATTGAGAGATGTTGTGAACAAAAATGCAAAAATCTATGTCTATGATGGTCTGTATAAAATCCAAGATTCTTGGATAGAAAGAGGGAAATCTGGTGGTGGTGTATTTAAGTATAAGTTTGTTAGATTGCCTGGACAACCCAGTGCTTTTGCTGTTTGGAAATCGGTTCAGAAGTGGAAGACAGGCTCATCTTCAAGGACTGGCCTTATTCTTGCAGACCTCTCCACAGGAGTTGAGAGTATTCCTGTATCACTTGTCAATGAAGTTGATAATGAGAAGGGGCCTTCTTTTTTCACTTATTTCCATTCTCTCAGAGATCAAAAACCATTCAGTTTAGGGCAATCTTCATATGGCTGTAACTGTAACAAAACATGTATCCCTGGTGATTTGAACTGCTCTTGCATTCAAAGAAATGAAGGTGACTTTCCATATACTGCAAATGGTGTTTTAGTGAGTCGGAAACCATTGGTTCATGAGTGTGGCCCAATGTGTAAGTGTTTTCCTAACTGCAAGAATCGAGTATCCCAGACTGGTTTGAAGCATCGAATGGAAGTGTTCAAAACAAAAGATAGAGGGTGGGGACTTCGATCACTGGATCCTATACGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGACGTTATTGACAGAGTCAAGGTAAATAAGAATGGGGGATATGATGATGAGTATGTTTTTGATACAAGCCGTATTTACGATCCATTCAAATGGAATTATGAACCTAGCTTATTGGAAGAAATAAGCTCAAATGTCTCTAGTGAGGATTATGCTATACCGTCTCCTCTAATTATCAGTTCTAAGAATTTTGGAAATGTGGCTAGATACATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCAGTCTTGTATGCAGAAAAAAATCAATCCTTTCTTCACATTGCATTTTTTGCCCTTAGACACATTCCTCCAATGACAGAGTTAACATATGATTATGGATGTTCTGGTCATGCTGATGGTAGCAGTGCACCCAAAGGGAGAAAGAAATGCTTGTGTGGATCATCAAAATGCCGTGGTTCTTTTGGTTGA 2016 0.4221 MEEGLCQNSVPGSGFVDKTRIVEAKPLRSLAPVLPKSLQSSLSGRYPSVFPPFVLFEEPQESQPSPAPIPAPIRSYRNPLDEEETRHGANGETSSPMEGLNGKSADDSQKRAVPPLKSCRSSQKRSKKTKESQFDSSSSVGGISVAKREDGDREVVNLVLMTYDSLRRRLCQLEDAKELNTTMAIKRADLRASNAMTGKAFRTNTRRRVGAVPGVEIGDIFFLRMEMCLVGLHGQSMSGIDYMTIKDELQEEPVALSIVSSGVYDNDAEDNDVLIYSGQGENFNKKDKHVIDQKLQRGNLALDRSSRRHNEVRVIRGLRDVVNKNAKIYVYDGLYKIQDSWIERGKSGGGVFKYKFVRLPGQPSAFAVWKSVQKWKTGSSSRTGLILADLSTGVESIPVSLVNEVDNEKGPSFFTYFHSLRDQKPFSLGQSSYGCNCNKTCIPGDLNCSCIQRNEGDFPYTANGVLVSRKPLVHECGPMCKCFPNCKNRVSQTGLKHRMEVFKTKDRGWGLRSLDPIRAGTFICEYAGDVIDRVKVNKNGGYDDEYVFDTSRIYDPFKWNYEPSLLEEISSNVSSEDYAIPSPLIISSKNFGNVARYMNHSCSPNVFWQPVLYAEKNQSFLHIAFFALRHIPPMTELTYDYGCSGHADGSSAPKGRKKCLCGSSKCRGSFG 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02758 671 ProSiteProfiles YDG domain profile. 210 358 IPR003105 -
Pumo10g02758 671 Pfam Pre-SET motif 391 489 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo10g02758 671 Gene3D - 192 379 IPR036987 -
Pumo10g02758 671 MobiDBLite consensus disorder prediction 80 145 - -
Pumo10g02758 671 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 82 665 - -
Pumo10g02758 671 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 22 671 IPR025794 GO:0016571
Pumo10g02758 671 SMART preset_2 387 481 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo10g02758 671 SUPERFAMILY PUA domain-like 192 380 IPR015947 -
Pumo10g02758 671 SMART G9a_1 205 362 IPR003105 -
Pumo10g02758 671 Pfam SAD/SRA domain 209 362 IPR003105 -
Pumo10g02758 671 SUPERFAMILY SET domain 396 668 IPR046341 -
Pumo10g02758 671 SMART set_7 497 648 IPR001214 GO:0005515
Pumo10g02758 671 ProSiteProfiles Post-SET domain profile. 655 671 IPR003616 -
Pumo10g02758 671 ProSiteProfiles Pre-SET domain profile. 433 494 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo10g02758 671 ProSiteProfiles SET domain profile. 497 642 IPR001214 GO:0005515
Pumo10g02758 671 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 192 377 - -
Pumo10g02758 671 Gene3D SET domain 380 670 IPR046341 -
Pumo10g02758 671 Pfam SET domain 508 642 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02758 Pumo-Chr10 52094626 52101191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02758 12 671 Su(var)3-9 homologs AT5G04940 52.346 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo10g02758 SAD_SRA 6e-47 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02758 10 52094626 52101191 Pumo10g02758 10 52094626 52101191 ECH