Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02711 ATGACGACTCGAATTGCGCCCGGTGTGGGAGCCAATTTGTTGGGTCAACATGCCGCCGAGAGGAATCAAGACGCCACTGCTTATGTCGGCAATCTTGACCCTCAGATAAGTGAGGAGTTATTATGGGAGTTGTTTGTTCAGGCCGGTCCAGTCGTTAATGTCTATGTTCCGAAGGATAGAGTCACCAACCAACATCAGGGTTATGGATTTGTTGAATTCCGCAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAACATGATTAAGCTTTATGGCAAACCCATCCGTGTCAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTTGGGGCAAACCTTTTCATTGGCAATCTTGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCGAAGATAATGAGAGATCCTGAGACAGGAAATTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACAAAGGGTGAACGGCATGGTACCCCTGCAGAAAGAGTTTTAGCTGCAAGTAATCCAACTACACATAAGAGCAGGCCTCATACTTTATTTGCCAGTGGACCTCCAACACTTCCCAACGTTCCTCAGGCTAATGGGGTTGCTCCAGTGCCTCCCCGACCCTTTGCTAATGGGGTTGCTCCTGCTGCGATTCCTGCCCTCCGTCCACCGCCCCCTCAAGCTGCTGCATTCCAGCCTATGCCGGTGCCTGGACAACCAACGTGGCATCAGCAACAGCCAGGTCTACCACCCGCAATGCCGCCTCCACCTCAAGTCCAGCAGTTCAGGCCACCTCACCCTGGTATGCAGCAGATGCCACCACCTCCACAAGCTCCTCCCAGGCCTCTGCCACCACCAGCAGTAATGGCAAGTCAGCCACCACCTATTTGGCGACCACCACCACCTCAGCAACAGGGTGGACGGCCTTTGCCATACCCTCAGTCCGCAATGCCGCCTCCACCACCTCCCCAGTAA 1089 0.5014 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTTHKSRPHTLFASGPPTLPNVPQANGVAPVPPRPFANGVAPAAIPALRPPPPQAAAFQPMPVPGQPTWHQQQPGLPPAMPPPPQVQQFRPPHPGMQQMPPPPQAPPRPLPPPAVMASQPPPIWRPPPPQQQGGRPLPYPQSAMPPPPPPQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02711 362 MobiDBLite consensus disorder prediction 253 362 - -
Pumo10g02711 362 MobiDBLite consensus disorder prediction 285 362 - -
Pumo10g02711 362 CDD RRM1_SF3B4 28 100 IPR034158 -
Pumo10g02711 362 FunFam Splicing factor 3b subunit 4 16 108 - -
Pumo10g02711 362 MobiDBLite consensus disorder prediction 253 271 - -
Pumo10g02711 362 CDD RRM2_SF3B4 111 193 IPR034159 -
Pumo10g02711 362 Gene3D - 16 106 IPR012677 -
Pumo10g02711 362 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 349 - -
Pumo10g02711 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Pumo10g02711 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Pumo10g02711 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Pumo10g02711 362 SUPERFAMILY RNA-binding domain, RBD 25 194 IPR035979 GO:0003676
Pumo10g02711 362 Gene3D - 107 205 IPR012677 -
Pumo10g02711 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Pumo10g02711 362 FunFam splicing factor 3B subunit 4 109 200 - -
Pumo10g02711 362 PRINTS Proline rich extensin signature 212 228 - -
Pumo10g02711 362 PRINTS Proline rich extensin signature 257 278 - -
Pumo10g02711 362 PRINTS Proline rich extensin signature 278 294 - -
Pumo10g02711 362 PRINTS Proline rich extensin signature 322 347 - -
Pumo10g02711 362 PRINTS Proline rich extensin signature 301 318 - -
Pumo10g02711 362 PRINTS Proline rich extensin signature 232 244 - -
Pumo10g02711 362 SMART rrm1_1 26 99 IPR000504 GO:0003723
Pumo10g02711 362 SMART rrm1_1 113 187 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02711 Pumo-Chr10 50884744 50889857 Transposed