Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02633 ATGAAAGAAATGAAAACGCTAACTGTTAATACTGAAGATTCTTTTTCCAGTTTGCTGGAACTTGCTTCTAACAATGATATTGAAGGTTTCAAGGTGCTTTTAGAGAAGGATTCTTCTTCGATCAATGAGGTCGGGCTCTGGTATGGCCGGCAAAACGGATCAAAGCAATTTGTTCTTGAGCATAGAACCCCTTTGATGGTTGCTGCTACTTATGGTAGCATTGATGTTATGAAGATTACACTGTTGTGCCCTGAGGCAGATGTGAATTTCGCTTGTGGGGCGAATAAAACCACTGCCCTTCACTGCGCTGCTTCTGGTGGTTCTGCCAATGCTGTTGATGCTGTGAGGCTTCTTTTAACGGCCGGAGCCGATGTGAATTGCGTGGATGTGAATGGGAATCGCCCTATTGATGTGATTGTTGTTCCTCCCAACCTGCAAGGTGTAAAAGCCGTTTTGGAGGAACTGCTTTTGGACAGTGCCTCTGATGGGTCTGTTGGTGAATTCTCTGTTCCAGTGTCTGTTAATTCATCCAGCCCTGGTTCTCCTGCCCATTTGTCGAATGGGATGCCTTACACTCCTTCGGCCTCACCGCCATCTCCTGTGGCAGCGAAGTTTACTGATGCAGCTATTGGCTCTCTTTCAGAGAAGAAGGAATATCCCATTGATCCATCGCTGCCTGATATAAAGAACAGCATATATGCGACTGATGAGTTTCGGATGTTTTCTTTCAAGGTGAGGCCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGCCCATTTGTTCATCCTGGAGAGAATGCTCGGAGGAGAGACCCGAGGAAGTTCCACTACAGCTGTGTGCCGTGCCCTGATTTTAGGAAAGGGGCTTGTAGGCGTGGAGACATGTGTGAATATGCTCACGGGGTGTTCGAGTGCTGGCTGCACCCGGCTCAGTATCGGACACGCCTCTGCAAAGATGGTACCAGTTGCAATCGAAGGGTGTGTTTTTTTGCGCACACTGCAGAGGAGCTCCGTCCGCTGTATGTGTCCACTGGATCTGCTGTCCCTTCACCCCGATCATCTGCCTCGGTTCCTAATGTCATGGACATGGCTGCTGCGATGAGCCTTTTGCCGGGCTCGCCTTCATCGGTCTCTTCCATGTCGCCATCCCACTTTGGCCAACCAATGTCCCCGTCTGCAAATGGCATGTCACTCTCGTCTGCTTGGGCACAGCCAAATGTACCGGCTCTTAATTTACCAGGAAGCAATCTTCAATCTAGTCGATTGAGGTCTTCCCTTAGTGCACGTGACATTCCACCAGAAGACTTGAATGCGATGTGCAATCTTGATGGCCAGCAGCAGCACCCTTTGAATGACTTGAGCTGTTACTTACAGCCTCGCTCCGGTGCTTGTTCTGTGAGTAGATCTGGTAGGTCCAAGACCCTAAATCCATCAAATCTGGAAGAGCTCTTTTCTGCGGAGATTTCTTCGTCTCCCCGGTATTCTGATCCAGCAGCGGGTTCTATGTTTTCCCCTACTCACAAATCAGCTGTTCTCAATCAGTTTCAACAGCTCCAGAGTATGTTATCGCCTATAAATACTAATTTGTTATCTCCTAAGAATGTTGAGCATCCTCTTTTACAGGCTTCCTTTGGTGTCTCTCCTTCCGGGAGGATGTCACCAAGAAGCGTTGAACCAATATCCCCTATGAGCACTCGCATATCTGCATTTGCTCAGCGTGAGAAACAGCAGCAGCAGCTGCGTAGTGTCAGTTCAAGGGACCTTGGTGCCAACAGTCCTGCCTCAGTTGTTGGCTCCCCTGCAAACCCTTGGTCAAAGTGGGGATCTCCTAATGGGAAAGTTGATTGGTCAGTAAATGGAGATGAGCTTGGTCATCAGATGCGAAGATCATCCTCATTCGAGCTTAAGAACAATGGGGAAGAGCCTGATCTATCTTGGGTCCAATCTCTGGTGAAGGAATCCCCACCTGAGATGATCAAAGAGAAGTTTGCATCTTCTATGGCTACTACATCCGCTGATGGACTGAATTCAATTTCCCAAATTGAGCCCATTGATCATTCTGTTTTAGGAGCCTGGCTTGAGCAAATGCAACTGGATCAGCTTGTAGTCTAG 2115 0.4832 MKEMKTLTVNTEDSFSSLLELASNNDIEGFKVLLEKDSSSINEVGLWYGRQNGSKQFVLEHRTPLMVAATYGSIDVMKITLLCPEADVNFACGANKTTALHCAASGGSANAVDAVRLLLTAGADVNCVDVNGNRPIDVIVVPPNLQGVKAVLEELLLDSASDGSVGEFSVPVSVNSSSPGSPAHLSNGMPYTPSASPPSPVAAKFTDAAIGSLSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASVPNVMDMAAAMSLLPGSPSSVSSMSPSHFGQPMSPSANGMSLSSAWAQPNVPALNLPGSNLQSSRLRSSLSARDIPPEDLNAMCNLDGQQQHPLNDLSCYLQPRSGACSVSRSGRSKTLNPSNLEELFSAEISSSPRYSDPAAGSMFSPTHKSAVLNQFQQLQSMLSPINTNLLSPKNVEHPLLQASFGVSPSGRMSPRSVEPISPMSTRISAFAQREKQQQQLRSVSSRDLGANSPASVVGSPANPWSKWGSPNGKVDWSVNGDELGHQMRRSSSFELKNNGEEPDLSWVQSLVKESPPEMIKEKFASSMATTSADGLNSISQIEPIDHSVLGAWLEQMQLDQLVV 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02633 704 MobiDBLite consensus disorder prediction 573 607 - -
Pumo10g02633 704 ProSiteProfiles Ankyrin repeat profile. 95 130 IPR002110 GO:0005515
Pumo10g02633 704 Gene3D - 277 340 - -
Pumo10g02633 704 SMART ANK_2a 60 90 IPR002110 GO:0005515
Pumo10g02633 704 SMART ANK_2a 95 127 IPR002110 GO:0005515
Pumo10g02633 704 SMART ANK_2a 13 43 IPR002110 GO:0005515
Pumo10g02633 704 Gene3D - 6 156 IPR036770 -
Pumo10g02633 704 ProSiteProfiles Ankyrin repeat region circular profile. 95 129 - -
Pumo10g02633 704 Pfam Ankyrin repeats (3 copies) 22 129 IPR002110 GO:0005515
Pumo10g02633 704 FunFam Zinc finger CCCH domain-containing protein 66 235 303 - -
Pumo10g02633 704 SUPERFAMILY Ankyrin repeat 9 152 IPR036770 -
Pumo10g02633 704 MobiDBLite consensus disorder prediction 374 398 - -
Pumo10g02633 704 MobiDBLite consensus disorder prediction 176 192 - -
Pumo10g02633 704 MobiDBLite consensus disorder prediction 573 611 - -
Pumo10g02633 704 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 282 302 IPR000571 GO:0046872
Pumo10g02633 704 SMART c3hfinal6 277 303 IPR000571 GO:0046872
Pumo10g02633 704 SMART c3hfinal6 312 335 IPR000571 GO:0046872
Pumo10g02633 704 PANTHER UNKEMPT FAMILY MEMBER 20 655 IPR045234 -
Pumo10g02633 704 ProSiteProfiles Zinc finger C3H1-type profile. 282 304 IPR000571 GO:0046872
Pumo10g02633 704 MobiDBLite consensus disorder prediction 176 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02633 Pumo-Chr10 48794243 48797955 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo10g02633 Ank_2 1.9e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02633 10 48794243 48797955 Pumo10g02633 10 48794243 48797955 ECH