Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02629 ATGCCGGGGAAACCTGACACTGATGATTGGCGTGTAGAGCGCGGCGAGCAGATTCAGTTTCAGTCTTCCATTTACTCTCATAATCAGCCTTGGTGGCGCGGAGTGGGGGAAAATGCCTCTAAATCATCTTCAGCTGATCAGTTAAATGGTTCAATCGTGAATGGTGTCACGCGGTCTGAGACTAATGAAGGCTTAGGTGATGGGATTGATTTCAGTAAGCAAAGGCAGCCTTTGGTTTCTCCTTCACTACCTGGCACTGATAAGTCAGGTGGAGGTGTTGCCAAAGAGTACCAAAACATCAAACATACCGTGTTGTCAACCCCATTTACCATGGACAAACATCTTGCTCCAAATCCTCAGATGGAACTTGTCAGTCATTCAGTTGTTTTAACATCTCCTTATTCAGATGCACAGTATGGTCAAGTCTTGACTACTTACAGGCAACAAGTTATGATAAACCCTCAGTTGTATGGAATGCATCATGCTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCCGAGCTTCAAAAGAAAGTAATAAAAAATAGAAAGCCATACCTCCATGAATCCCGTCACCTACATGCCATGAGAAGGGCAAGAGGCAATGGTGGTCGCTTTCTTAACACAAAGAAGCTTGAAAATTACAATTCTAATGCCACTTCAGACAAAGGCAACAATACTGGTGCAAACCCCTCAACAAACTCACCTAACACTCAACATTTGTTTACCAACAATGAGAATCTAGAAACATCAAATGTGTCAAGGTCGGCGGTTCAGGACATGCACAGAGTGCAAAGTTTCAATATTGGTTACCATAATGGAAATGGTCTTACAGCACTATACCTTTCTCAAGCAAATGGAAAAAAGGAGGGAGACTGCTTTGGTAAAGAGAGTGACCCTAATGGGGCTTTCAAATAA 984 0.4309 MPGKPDTDDWRVERGEQIQFQSSIYSHNQPWWRGVGENASKSSSADQLNGSIVNGVTRSETNEGLGDGIDFSKQRQPLVSPSLPGTDKSGGGVAKEYQNIKHTVLSTPFTMDKHLAPNPQMELVSHSVVLTSPYSDAQYGQVLTTYRQQVMINPQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELQKKVIKNRKPYLHESRHLHAMRRARGNGGRFLNTKKLENYNSNATSDKGNNTGANPSTNSPNTQHLFTNNENLETSNVSRSAVQDMHRVQSFNIGYHNGNGLTALYLSQANGKKEGDCFGKESDPNGAFK 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02629 327 Gene3D - 171 232 - -
Pumo10g02629 327 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Pumo10g02629 327 MobiDBLite consensus disorder prediction 237 264 - -
Pumo10g02629 327 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Pumo10g02629 327 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 53 281 IPR001289 GO:0003700|GO:0006355
Pumo10g02629 327 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Pumo10g02629 327 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Pumo10g02629 327 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Pumo10g02629 327 MobiDBLite consensus disorder prediction 58 93 - -
Pumo10g02629 327 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02629 Pumo-Chr10 48707983 48714062 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pumo10g02629 CBFB_NFYA 2.4e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02629 10 48707983 48714062 Pumo10g02629 10 48707983 48714062 ECH