Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02544 ATGATATTACCCATCCTAGGGTTGTTTTTCTGGCTGGAAAACAAGTTATCCAACAATTCCAGCGAGGCCAATCATTATTGCTCAGAATGGAAGGAACGTGTGCAGATCATTGATGGAATAAATAGCCTATTCCATGAACAATATGGGAACACCAGTGGTGCACACTGTGCTTGCTCCTTCTGTGGCAGATTAAGCAACGTAGTCACAAGATGCTCACGCTGCAAAGCTGCTATATATTGCTCAAATGCTTGCCATGTTAAGCACTGGAGGTTTTGCCATAAATATGAATGCGTTGAGATAGAAGGGTCACAAGATCAGCAGGAATCACCTTCTCATGGAACCCATTGCCTTCTCATGGAGCCTGAAAATGATAAGTACTATGAAGTTGAGCAGAGAAGATATAAGGGAGTCGATGTTTACTATATTGAAGGAGGAGAAAACAGTGTTGAGATCAGTGATGAAACAGCAATGCCTCGACATGGAATTGTGAATGGTAACGATGGCTGTGCAGTGTGTGGTAATCCAAGCTCTAAAGTATGCTCAAGGTGCAAAGCCATAAAATATTGCTCACAAACATGCCAACATTTCGATTGGAGATCCGGGCATAAGTTTCAATGTCTTGTTCAGAAGGCAAATTCAACTGAAGCAGCAATGGTCAATCAAGAAAGACAAGCTAATGAAAATGTTGTAAATCTCACGAATTCAAATGAGGTGGAAGATAATGCTCATTCATCTAATCCTCTTCGCTTGGAATTTTACTCAGGAAACACCAGTTCCAGGGCCCTGATTCGAAGTTCTCTGTCTCAGGAAGCAACCAATAATGCTCCAAAGGAGGTTGAAGATCAATTGAGAAGCCTAGAAGAAGAATTGGCAAAGATTAAAGATGAGAACATGTCATTACGATCAGAGCGCGACGAATGGGAAGTGCGAGCAAGGAATTCTATAGATAGACTTTATAGCTTCAGGAAAGAAAATGAAAACCAGCTGTTTATTTTGAAGCATGAAAATGAATTGATGTCAAATGCTGAGAAGCAAGCACGTCAAATGGTGAATAGTTTATCTCAGAGGCTACACTGCTTGCAGATTGAAGTGGAAAGTGGAGTTGAAGAGAGGAAGAAACAAGAAGAATATATACATATGTTGCAGAATGAATGTGCTAAGGTTAAGATAGAGCTACAAGAACAGAACAAGTGCGTCAAAAGGCTTACACTAGAGCTTGATAAGACCACTCAATTTCCTAGGAGAATAACTGAAGAGACAAGACAAAAGTTAGTCAACGCTTTTAGTGAAATTGCAGCTGTTGAATCCAATGCTAATGGTGCTGAGGTGTCCCAGCCACTTAGTTTGAGCAGAAATCCAACCTTTACAAAACAGGGTTGTTCAATTTGTCTAACCAATGAGAAGAACATGACCTTTGGTTGTGGACACATGACTTGTTTAGAGTGTGGATCAAAAATTCGCAAGTGTCATATATGCCGAAGGATGATCACCAGTCGTATCAGATTGTTTCCTGATTAA 1518 0.4045 MILPILGLFFWLENKLSNNSSEANHYCSEWKERVQIIDGINSLFHEQYGNTSGAHCACSFCGRLSNVVTRCSRCKAAIYCSNACHVKHWRFCHKYECVEIEGSQDQQESPSHGTHCLLMEPENDKYYEVEQRRYKGVDVYYIEGGENSVEISDETAMPRHGIVNGNDGCAVCGNPSSKVCSRCKAIKYCSQTCQHFDWRSGHKFQCLVQKANSTEAAMVNQERQANENVVNLTNSNEVEDNAHSSNPLRLEFYSGNTSSRALIRSSLSQEATNNAPKEVEDQLRSLEEELAKIKDENMSLRSERDEWEVRARNSIDRLYSFRKENENQLFILKHENELMSNAEKQARQMVNSLSQRLHCLQIEVESGVEERKKQEEYIHMLQNECAKVKIELQEQNKCVKRLTLELDKTTQFPRRITEETRQKLVNAFSEIAAVESNANGAEVSQPLSLSRNPTFTKQGCSICLTNEKNMTFGCGHMTCLECGSKIRKCHICRRMITSRIRLFPD 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02544 505 ProSiteProfiles Zinc finger MYND-type profile. 169 206 IPR002893 -
Pumo10g02544 505 Pfam MYND finger 169 206 IPR002893 -
Pumo10g02544 505 Pfam MYND finger 58 97 IPR002893 -
Pumo10g02544 505 Gene3D - 43 104 - -
Pumo10g02544 505 Gene3D - 161 212 - -
Pumo10g02544 505 SUPERFAMILY HIT/MYND zinc finger-like 167 209 - -
Pumo10g02544 505 SUPERFAMILY HIT/MYND zinc finger-like 55 100 - -
Pumo10g02544 505 ProSitePatterns Zinc finger MYND-type signature. 169 206 IPR002893 -
Pumo10g02544 505 ProSiteProfiles Zinc finger MYND-type profile. 58 97 IPR002893 -
Pumo10g02544 505 ProSiteProfiles Zinc finger RING-type profile. 460 493 IPR001841 -
Pumo10g02544 505 Coils Coil 332 352 - -
Pumo10g02544 505 PANTHER MYND DOMAIN-CONTAINING 54 109 IPR044508 -
Pumo10g02544 505 SUPERFAMILY RING/U-box 459 500 - -
Pumo10g02544 505 Coils Coil 276 310 - -
Pumo10g02544 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 437 504 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02544 Pumo-Chr10 43909929 43921166 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02544 169 206 Miscellaneous Gene Families AT4G31670 60.526 3.61e-09 57.4