Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02543 ATGGAGCACCCCAATGGTGAACTAGACCATTATTTTGATGAGGATGATGGTCGCCGGGCCACCGCGCCCGGCGACAATGCTCGGAGGAGACACGGTGGTTGTGCTTTCTGTGGAAATTTTAGCACCAGAAGGTGCTCTCGCTGCAAGGCTGCTAGATATTGCTCAATGGAATGTCAAATTAATCATTGGAGGTCAGGGCATAAATATGAATGTTTGGAATCAGAGAATGTAGCAGATGAAGCAAGACCAAATCATGATCACGGAACCTCCAAGCTTGTCGAGAAGTCTGAAATGGTTAGTACCTCTAATGGGTCCCATGTTGATGATGGAGTGAAGTGGAGTTCAGAATCAAATGTGGGAATGGAAGTATCCAGTGGCAATGATGTTAACAACTTCCATGGTTGTGAAATATGTGGTAGCCCAAGTACCACTAGATGTTCACGATGCAAAGCCGTCAAATACTGCTCAGTGAAGTGCTTGATTATGGACTGGAAATGGCATAAAGATCACTGCATTGCAAGGAACGTAGATTCAGCTCCAATTGAAAGACCTCATAGAGATGTTGGAGTGCTCAAGAATTCAAATGAAGAGGAAGAGAATATTCGTTCATCCGCCCCCCTTTCTTTGGAGTTTCATCCGGAAGGAACCACAAGCTTCAATTCTCTAATTGAAGTATCACAGGATTCTACCAACAAAGTGTTATATCTTGAGGACGAAGTAGCAAAGTCTAGGAATGAGATTTTATTACTATGGTCAGAACTTGACAAGTGGAAGAATCGCGCGAATTTCGCTAGAGAAAAATTTCAAAGCCTCAAGAGAGAATCTAATAACCAGTTGCTTGAGTTGAAGAAGGAAAAGGAATCAGTATCAGATGCTGAAAAGAAATCTTGCAATGTGATTCACAGTTTACATGCAAGGCTAAACCACTTGCAGAATGTAGTGCAAGAAAGCATTGCAGAGAAGAGAAAGCTAGAAGAAGATATACAAAATTTAGAGAGTGAATGTGCTGACCTGAAGAAACAATTGCAAGAGGATCATAAACGTGCTCAACGTCTTACAGTGGAATCTGACAAGAGTCGTGAGACTGCACGAATAGCCATGAGAGAAGTTGAAGCAGTAAGACTAGACTTACAAGAAGAGCGAGAACATGCTCAACAACTTAAGGAGAATTTTCGTAGAGATGTTATATTTGCTGAATCTAGAGCTGCCATTGCTGAGGCAAAACTCAGTGATCTTTATAGGAAAATCAGAATGTCAGACTACAAGGTCTGTTCTATATGCCTCTCCAATGACAAGGACTTGGCCTTTGGATGTGGGCACATGACTTGTAGAGACTGTGGATCAAAATTATCAAAGTGTCCTATATGCCGGGAGCAGATCACAAACCTTATCAAGCTGTTTCCTGGGTGA 1410 0.422 MEHPNGELDHYFDEDDGRRATAPGDNARRRHGGCAFCGNFSTRRCSRCKAARYCSMECQINHWRSGHKYECLESENVADEARPNHDHGTSKLVEKSEMVSTSNGSHVDDGVKWSSESNVGMEVSSGNDVNNFHGCEICGSPSTTRCSRCKAVKYCSVKCLIMDWKWHKDHCIARNVDSAPIERPHRDVGVLKNSNEEEENIRSSAPLSLEFHPEGTTSFNSLIEVSQDSTNKVLYLEDEVAKSRNEILLLWSELDKWKNRANFAREKFQSLKRESNNQLLELKKEKESVSDAEKKSCNVIHSLHARLNHLQNVVQESIAEKRKLEEDIQNLESECADLKKQLQEDHKRAQRLTVESDKSRETARIAMREVEAVRLDLQEEREHAQQLKENFRRDVIFAESRAAIAEAKLSDLYRKIRMSDYKVCSICLSNDKDLAFGCGHMTCRDCGSKLSKCPICREQITNLIKLFPG 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02543 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 468 IPR013083 -
Pumo10g02543 469 SMART ring_2 424 456 IPR001841 -
Pumo10g02543 469 Gene3D - 122 176 - -
Pumo10g02543 469 Coils Coil 307 355 - -
Pumo10g02543 469 Gene3D - 22 76 - -
Pumo10g02543 469 ProSiteProfiles Zinc finger MYND-type profile. 135 171 IPR002893 -
Pumo10g02543 469 FunFam Ubiquitin carboxyl-terminal hydrolase 15 25 75 - -
Pumo10g02543 469 Pfam MYND finger 34 71 IPR002893 -
Pumo10g02543 469 Pfam MYND finger 135 171 IPR002893 -
Pumo10g02543 469 ProSiteProfiles Zinc finger MYND-type profile. 34 71 IPR002893 -
Pumo10g02543 469 SUPERFAMILY RING/U-box 413 463 - -
Pumo10g02543 469 Coils Coil 360 394 - -
Pumo10g02543 469 Pfam Prokaryotic RING finger family 4 424 461 - -
Pumo10g02543 469 SUPERFAMILY HIT/MYND zinc finger-like 30 72 - -
Pumo10g02543 469 SUPERFAMILY HIT/MYND zinc finger-like 132 172 - -
Pumo10g02543 469 PANTHER CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING 126 467 - -
Pumo10g02543 469 ProSiteProfiles Zinc finger RING-type profile. 424 457 IPR001841 -
Pumo10g02543 469 MobiDBLite consensus disorder prediction 1 25 - -
Pumo10g02543 469 Coils Coil 254 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02543 Pumo-Chr10 43865651 43873752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02543 34 71 Miscellaneous Gene Families AT4G31670 63.158 1.45e-10 61.6