Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02538 ATGACACAGCCATCTCCTCCTCCGCCGCCGCCGCCGCTGGCGCCACCAACACCGCCGACGCCACCGCCTCCTTCTCAGCCGGCGGCCGAGAGCGTCCGCGTTCGCTGCGCCGGCTGCCGCATGATCCTCACTGTGGCGCCCGGCCTCACCGAGTTCGCGTGCCCTACCTGCCGAATGCCGCAGATGCTTCCGCCAGAGCTCATGCCCAAGGCGGCGGCGAACACGGCGGCAGCGCAGCCTCCTCCTCCGTCGTCCGCTCCGGCATCGCAGCCGTCGCAGGCACCGGCGCACGGCATTGATCCCACTAAGATCCAGCTCCCCTGCGCCTCGTGCAAGGCCGTCCTCAACGTCCCTCACGGCCTCGCGCGCTTCGCTTGCCCTCAGTGCGGGGTTGACCTCGCCGTCGATGTCTCCAAGGTCAAGCAGTTCTTCCCCGTGCCGCCGCCGGAAGAAGTTAATGAGGTTGCTGTTGAAGTGGAGCGGGACGAAGATGAAGGTGGCATGGTTGGAGAAACATTTACAGATTATCGGCCGCCAAAAGTATCTATTGGACCTCCACACCCAGATCCTGTTGTGGAGACATCTTCCTTGTCTGCAGTGCAGCCTCCTGAGCCAACTTATGATCCAAAAATTAAAGATGTTTTGGAAAGTTCAAAGGCTTTGTCTTGCTTGCAAATTGAGACATTGGTCTATGCTTGCCAGAGACACCTTCAACACCTCCCAAATGGAGCTAGGGCAGGATTCTTTATTGGAGATGGAGCTGGTGTAGGTAAAGGTCGAACTATTGCAGGGCTGATTTGGGAGAACTGGCATCACTATAGGAGGAAAGCATTGTGGATTTCCGTTGGTTCAGACTTGAAGTTTGATGCAAGAAGAGACTTGGATGATGTGGGTGCAACATGCATTGAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGATCAGGGAGGGAGTTGTTTTTTCGACGTACAATAGCCTTATAGCATCTTCTGAGAAAGGTCGTTCTCGTCTCCAGCAGCTTGTACAGTGGTGTGGACCAGGGTTTGACGGTCTTATAATTTTTGATGAGTGTCACAAAGCAAAAAATTTGGTCCCTGAGTCTGGTAGTCAGCCAACACGAACTGGAGAAGCAGTGCTTGATATCCAGGATCGACTACCTGAAGCTCGTGTTGTTTATTGTTCAGCGACTGGAGCATCTGAACCTCGCAATATGGGTTATATGGTTCGACTTGGTCTTTGGGGAGATGGGACTTCATTCTCTGATTTCCGTGAATTTCTAGGTGCTCTTGACAGAGGGGGTGTTGGAGCTCTCGAATTAGTTGCCATGGACATGAAAGCAAGGGGCATGTATTTATGTCGGACACTTAGCTATGAGGGTGCAGAGTTTGAAGTTATCGAAGCACCATTAGAAGATAAAATGATGGAAATGTATAAAAAGGCAGCAGAATTTTGGGCTGAATTACGAGTAGAATTGCTGTCAGCCAGTGCCTTCCTAAATGATAAACCAAATTCTAGTCAACTATGGCGATTATACTGGGCAAGCCACCAGCGTTTCTTTAGACACATGTGTATGTCTGCTAAAGTCCCTGCTACTGTGAGACTAGCGAAGCAAGCATTAGTTGAAGAAAAATGTGTAGTCATTGGTCTTCAGAGCACTGGAGAAGCAAGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCCCGAGAATTGCTGCTTAAATTTGTGGAAGATAATTACCCATTACCGGAAAAACCTGAACTTCTCCCAGGAGAGGATGGGGTAAAAGAACTCCAACGGAAGAGGCACTCTGCAACTCCTGGTGTTTCAGTGAAAGGAAGGGTCAGAAAAGTAGCCAAGTGGCAACCTCCTAGTGATGCTGAAAGTGATGAAGAATCTGAAACTGACTCTGCCATTGAATCTACTGACTCTGATGATGAGTTTCAAATATGTGAAATTTGCACTACAGAGGAGGAAAGGAAAAAATTGCTACAGTGTTCCTGCTGCGGTAAATTAGTCCATTCCACATGCCTGATGCCACCAATTGGTGATATAGTTCCTGAAGAGTGGTCATGCCATTTGTGTAAGGAGAAAACAGATGAATATCTTCAAGCAAGACAGGCCTACATAGCTGAGCTTCAGAAGAGGTATGATGCAGCCTTGGAACGCAAGACAAAAATATTAGAGATAATACGTTCTTTGGATCTTCCAAATAATCCTTTGGATGATATTGTTGACCAGCTAGGAGGCCCTGACAAAGTTGCAGAAATGACAGGAAGGAGAGGCATGCTTGTGAGGGCTGCTACTGGAAAGGGTGTAACTTATCAGGCTCGTAATACAAAAGATGTCACTATGGAAATGGTTAACATGCATGAAAAGCAGCTCTTTATGGATGGTAAAAAGTTAGTTGCTATTATCTCTGAAGCTGGATCAGCTGGCGTTTCTTTGCAGGCAGATAGACGAGCTGCAAATCAGAAAAGAAGGGTTCATTTAACTCTAGAACTTCCATGGAGTGCTGACCGGGCAATCCAGCAGTTTGGAAGAACTCATCGATCAAATCAAGCTTCAGCACCAGAATACAGGATACTCTTTACAAATCTTGGTGGAGAACGAAGATTTGCATCAATTGTTGCCAAGAGATTAGAATCTCTTGGTGCTTTGACTCAGGGTGACCGCAGGGCTGGACCTTCGTTAAGTGCTTATAATTATGATAGTGCCTATGGAAAGAAGGCTCTGATGATTATGTACAAAGGAATAATGGAGCAGGATTCTCTGCCTGTGGTACCTCCGGGATGTTCATCTCACAGACCAGATACAATTCAAGATTTTATTGTGCAGGCAAAAGCTGCTCTTGTATCTGTTGGAATAGTAAGGGACACAGTTCTTGGTAATGGTAAATCTGGTCGTATTATTGATTCAGATATGCACGAAGTTGGACGGTTCCTCAACCGGATTTTGGGACTACCTCCTGATATTCAGAATGGGCTATTTGAGTTATTTGTGAGTATCTTGGATCTTCTTGTTCGGAATGCTCGCATTGAAGGTAACCTTGACACTGGCATTGTTGACTTGAAAGCTAATGTAATTGAACTACAAGGGACTCCAAAGGTTTGTTTACCTGTTCATGTTGATCAATTGACTGGGGCCTCAACAGTTCTGTTTACATTCATCTTAGATCGTGGGATCACATGGGAGTTGGCAAGTACAATGCTGAATGAAAAGCAGAAGGATGGGCTTGGTTCAGCCAATGATGGCTTCTATGAGTCCAGGAGGGAGTGGTTGGGAAGACGTCATTTCATTTTAGCATTTGAAAGTTCCGCTTCGGGTATGTATAAAATAGTTCGCCCCCCTGTTGGAGAATCAAACAGGGAGATGCCTCTGTCTGAATTAAAAAGTAAATATAGAAAAATTTCAACTTTAGAGAAGGCTCAGTCTGGTTGGGAAGAAGAATATGAAGTTTCATCTAAACAGTGCATGCATGGTCCCAATTGTAAGATTGGCAACTTCTGTACAGTTGGTAGAAGACTACAGGAAGTAAATGTCTTGGGTGGCCTCATCCTTCCTGTTTGGGGAGCCGTAGAAAAGGCTCTTTCAAAGCAGGCCCGCCTAAGCCATAGGAGGTTACGTGTTGTACGCATTGAAACTACTGTGGATACGCAACGTATTGTTGGACTTCTTGTTCCTAATGCAGCAGTGGAAACTGTGCTTCAAGGTTTAGCGTGGGTTCAAGAAATTGATGATTGA 3789 0.465 MTQPSPPPPPPPLAPPTPPTPPPPSQPAAESVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMPKAAANTAAAQPPPPSSAPASQPSQAPAHGIDPTKIQLPCASCKAVLNVPHGLARFACPQCGVDLAVDVSKVKQFFPVPPPEEVNEVAVEVERDEDEGGMVGETFTDYRPPKVSIGPPHPDPVVETSSLSAVQPPEPTYDPKIKDVLESSKALSCLQIETLVYACQRHLQHLPNGARAGFFIGDGAGVGKGRTIAGLIWENWHHYRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSKSVGIREGVVFSTYNSLIASSEKGRSRLQQLVQWCGPGFDGLIIFDECHKAKNLVPESGSQPTRTGEAVLDIQDRLPEARVVYCSATGASEPRNMGYMVRLGLWGDGTSFSDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEDKMMEMYKKAAEFWAELRVELLSASAFLNDKPNSSQLWRLYWASHQRFFRHMCMSAKVPATVRLAKQALVEEKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEDNYPLPEKPELLPGEDGVKELQRKRHSATPGVSVKGRVRKVAKWQPPSDAESDEESETDSAIESTDSDDEFQICEICTTEEERKKLLQCSCCGKLVHSTCLMPPIGDIVPEEWSCHLCKEKTDEYLQARQAYIAELQKRYDAALERKTKILEIIRSLDLPNNPLDDIVDQLGGPDKVAEMTGRRGMLVRAATGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRILFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKKALMIMYKGIMEQDSLPVVPPGCSSHRPDTIQDFIVQAKAALVSVGIVRDTVLGNGKSGRIIDSDMHEVGRFLNRILGLPPDIQNGLFELFVSILDLLVRNARIEGNLDTGIVDLKANVIELQGTPKVCLPVHVDQLTGASTVLFTFILDRGITWELASTMLNEKQKDGLGSANDGFYESRREWLGRRHFILAFESSASGMYKIVRPPVGESNREMPLSELKSKYRKISTLEKAQSGWEEEYEVSSKQCMHGPNCKIGNFCTVGRRLQEVNVLGGLILPVWGAVEKALSKQARLSHRRLRVVRIETTVDTQRIVGLLVPNAAVETVLQGLAWVQEIDD 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02538 1262 Pfam P-loop containing NTP hydrolase pore-1 186 486 IPR039187 -
Pumo10g02538 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 809 914 IPR027417 -
Pumo10g02538 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 429 IPR027417 -
Pumo10g02538 1262 ProSiteProfiles Zinc finger PHD-type profile. 663 713 IPR019787 -
Pumo10g02538 1262 FunFam Protein strawberry notch homolog 2 217 417 - -
Pumo10g02538 1262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 649 735 IPR013083 -
Pumo10g02538 1262 MobiDBLite consensus disorder prediction 630 658 - -
Pumo10g02538 1262 Pfam C-terminal domain on Strawberry notch homologue 754 1038 IPR026937 -
Pumo10g02538 1262 SUPERFAMILY FYVE/PHD zinc finger 657 716 IPR011011 -
Pumo10g02538 1262 MobiDBLite consensus disorder prediction 72 99 - -
Pumo10g02538 1262 ProSitePatterns Zinc finger PHD-type signature. 666 710 IPR019786 -
Pumo10g02538 1262 Gene3D - 214 416 IPR027417 -
Pumo10g02538 1262 MobiDBLite consensus disorder prediction 1 28 - -
Pumo10g02538 1262 MobiDBLite consensus disorder prediction 643 658 - -
Pumo10g02538 1262 PANTHER STRAWBERRY NOTCH-RELATED 29 1256 IPR026741 GO:0006355
Pumo10g02538 1262 MobiDBLite consensus disorder prediction 1 30 - -
Pumo10g02538 1262 SMART PHD_3 665 711 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02538 Pumo-Chr10 43630824 43656622 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02538 10 43630824 43656622 Pumo10g02538 10 43630824 43656622 ECH