Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02495 ATGCGCAATTCAAAGTCTGCAGCGTCTATTCTCATAGCACGTGCCAAGTCCCTCCAACGTCACCACCACCACGTGCGTCCCTGCGTCCCTTCTTCTTCTTCTTCAACCTCAACCCCACTCTTCAGGTTTCACCCTTGGCTTTCTTCCCTGTGCAACGTGAAATCACTCATCACCACGCGCCTCTTCTCCAGCTACTACCCCCTCGAACAGTTCTCCGATGACGAATACGACTGCGATTTCGAGAACCAACAGGCATCGTCTACGGTGGCCAATGTGGATGAGTGGAAATGGAAACTCAGCATGCTGTTACGCAGCGAAAAGGACCAGGAGATTGTATCTAGAGACAGAAAAGATAGGAGAGACTATGAACAGATAGCTAACCTTGCCAAAAGAATGGGGCTTTACAGTGAGTTGTTTGGAAAAGTGGTTGTTGCAAGCAAGGTGCCTCTTCCTAACTACCGTCCAGATTTGGATGACAAACGTCCACAAAGAGAGGTGGTGATTCCACTAAGCTTGCAAAGGAGGGTTGAGGGTTTGTTGCAGGAATACCTTGATAGACTTCAGTTGAATTCTGCAAAGACAACTGACAGCCTGGATGATGTGAACTCCACCAATCATGTTAAAGATATAGACATGGATGAAAATGCTGATTCTTTTGTGGATGAATCTGTTATGGAAAAGGTTCTCCAGAAGAGGAGTTTGAGGATGCGTAATATGCAAAGAGCTTGGCAGGAATCACCTGAAGGCAGGAAGATGCTGGAATTCCGGAAGTCTCTACCATCATTCAAGGAGAAGCAAAGTTTACTTCAAGCTATAGCACATAATCAGGTGATAGTTATATCTGGAGAGACTGGCTGTGGTAAAACCACTCAACTTCCTCAGTATGTATTACAATCAGAGATAGAGTCCGGTCGTGGAGCATTTTGTAGCATTATTTGCACACAGCCTCGAAGGATCTCTGCTATGGCAGTGGCAGAGAGAGTGTCAGCAGAGCGAGGAGAGCCTCTTGGTGAAACAGTTGGCTTCAAAGTTCGATTAGAAGGAATGAAAGGGAAAAACACCCATCTGCTATTTTGTACCAGTGGTATATTACTTAGAAGGTTGTTGAGTGATCGAAACCTGAATGGTATAACCCATGTTTTTGTGGATGAAATTCATGAAAGAGGCATGAATGAAGACTTCTTATTGATTGTGTTAAAGGATCTGCTTCCACGTCGTCGGGATTTAAGATTGGTTTTAATGAGTGCCACCTTGAATGCTGAGCTTTTTTCGAATTATTTTGGAGGTGCTCCTACATTTCATATTCCGGGTTTCACCTATCCGGTTAGAGCACACTTTTTAGAAGATATTTTGGAAATGACTGGATATAAATTGACTTCCTTCAACCAAATTGATGATTATGGTCAAGAGAAAATGTGGAAGACCCAAAAGCAACTAGCACCACGGAAAAGGAAAAACCAGATCACTGCTCTTGTTGAGGATGCTCTTTCTAAATCAAGCTTTGAGAGCTATAGCTCCAGGGCACGTGATTCACTAGCATCTTGGGCACCTGACTGCATTGGGTTTAATCTCATTGAGGCTGTTCTATGCCATATATGTCGGAAGGAACGACCAGGTGCTGTCTTAGTATTTATGACTGGGTGGGAGGATATAAGCTCTTTAAGAGATCAGCTTAAAGCACATCCTCTTTTAGGAGATCCCAATAGGGTTCTGCTTCTAACATGTCATGGTTCAATGGCAACTTCAGAACAGAAACTCATATTTGAGAAACCACATCCAAATATAAGGAAAGTGATACTTGCTACAAATATGGCCGAGGCAAGTATTACAATCAATGACATAGTTTTTGTGGTTGATTGTGGAAAAGCAAAAGAGACCACTTATGATGCTTTGAATAACACGCCGTGTCTTCTACCTTCTTGGATTTCACAAGCATCTGCACGTCAGAGAAGGGGTAGAGCTGGTCGTGTGCAGCCAGGAGAATGTTACCACCTTTACCCAAAATGTGTTTATGAAGCCTTTTCTGAATATCAACTTCCTGAACTACTGAGAACGCCTTTGAACTCTCTTTGCTTGCAAATAAAAAGTTTGCAGGTTGAGAGCATAGGAGAGTTCCTATCAGCAGCTTTACAGGCACCAGAGCCACGGGCTGTTCAAAATGCTATTGATTTTCTCAAGATGATTGGAGCATTAGATGAAAAAGAAAATCTTACAAATCTTGGGAAGTTTCTCTCTATGCTTCCCGTGGATCCCAAGCTGGGAAAAATGTTAATAATGGGAGCTATATTTCGATGCTTTGATCCTGTTCTTACAATAGTTGCTGGCCTTAGTGTCAGGGATCCTTTTCTTTTGCCTCAGGACAAGAGGGATTTAGCAGGGACAGCGAAGTCTAGGTTTTCTGCTAAAGATTACAGTGATCATATGGCTCTTGTTCGAGCATATGAAGGATGGAAAGATGCTGAAAGAGAAGGTTCGGCTTACGAATATTGCTGGAGAAATTTTCTTTCAGCCCAAACTCTTCAGGCTATTCATTCACTTCGGAAGCAGTTTAGCTTTATCTTGAAAGAAGCTGGCTTGGTAGAAGCAGATGCTAGCATCATTAACAAACTGAGTCACAATCAGTCTCTTGTGCGCGCAGTCATTTGTTCTGGACTCTTTCCTGGCATAGCATCGGTGGTGCACAGGGAGACATCCATGTCATTTAAAACAATGGATGATGGCCAGGTTTTATTATATGCTAATTCAGTGAATGCACGTTACCAGACCATTCCTTACCCTTGGTTGGTTTTTGGTGAGAAAGTTAAGGTCAATGCTGTTTTCATCCGTGATTCCACTGGTGTATCTGATTCAATACTTATCCTTTTTGGTGGTGCTCTAAGTAATGGGATACAGGCTGGGCATCTGAAAATGTTAGATGGGTATGTTGACTTATTTATGGATCCTAGTTTAGCTGACTGCCATTTGAAGCTGAAGGAAGAGCTCAATAAGCTTATCCAGAAGAAGCTGGAAGATCCTAGCATTGACATTCACAAGGAAGGGAAGTACTTGATGCTTGCTGTTCAGGAGCTGGTTTCAGGGGATCAATGTGAAGGAAGATTTGTATTTGGCCGTGAAAGCCGGAAGCCTAAGGCCTCCAATGATGAAAACAAATTCACAAAAGATGGAACAAATCCCAAGAGCTTGCTGCAGACACTGTTGATGCGAGCAGGGCACTCTCCACCAAAATACAAAACAAAACATCTCAAGACAAATGAGTTTAGGGCACTGGTGGAGTTCAAAGGAATGCAATTTGTTGGCAAACCAAAGAGAAACAAGCAACTTGCAGAAAGGGATGCTGCTATAGAGGCATTGGCTTGGTTGACTCACACCTCTGACAATAATCAGCATGAAGATGATAACTCTCCTCCTGATGTCACTGACAACATGCTAAAACTCCTAGGGAAGCGTAGAAAATCAAAGCGAGGCCATGGTTGA 3474 0.4303 MRNSKSAASILIARAKSLQRHHHHVRPCVPSSSSSTSTPLFRFHPWLSSLCNVKSLITTRLFSSYYPLEQFSDDEYDCDFENQQASSTVANVDEWKWKLSMLLRSEKDQEIVSRDRKDRRDYEQIANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEYLDRLQLNSAKTTDSLDDVNSTNHVKDIDMDENADSFVDESVMEKVLQKRSLRMRNMQRAWQESPEGRKMLEFRKSLPSFKEKQSLLQAIAHNQVIVISGETGCGKTTQLPQYVLQSEIESGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFGGAPTFHIPGFTYPVRAHFLEDILEMTGYKLTSFNQIDDYGQEKMWKTQKQLAPRKRKNQITALVEDALSKSSFESYSSRARDSLASWAPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISSLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPHPNIRKVILATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRAVQNAIDFLKMIGALDEKENLTNLGKFLSMLPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKEAGLVEADASIINKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLKMLDGYVDLFMDPSLADCHLKLKEELNKLIQKKLEDPSIDIHKEGKYLMLAVQELVSGDQCEGRFVFGRESRKPKASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQHEDDNSPPDVTDNMLKLLGKRRKSKRGHG 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02495 1157 SMART ultradead3 257 450 IPR014001 -
Pumo10g02495 1157 FunFam DExH-box ATP-dependent RNA helicase DExH3 212 437 - -
Pumo10g02495 1157 Pfam Helicase conserved C-terminal domain 527 657 IPR001650 -
Pumo10g02495 1157 Gene3D - 1037 1125 - -
Pumo10g02495 1157 FunFam DExH-box ATP-dependent RNA helicase DExH3 520 676 - -
Pumo10g02495 1157 SMART helicmild6 552 658 IPR001650 -
Pumo10g02495 1157 Gene3D - 207 437 IPR027417 -
Pumo10g02495 1157 MobiDBLite consensus disorder prediction 1037 1054 - -
Pumo10g02495 1157 CDD SF2_C_RHA 513 666 - -
Pumo10g02495 1157 SMART DRBM_3 1058 1121 IPR014720 -
Pumo10g02495 1157 Pfam Double-stranded RNA binding motif 1058 1120 IPR014720 -
Pumo10g02495 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 826 IPR027417 -
Pumo10g02495 1157 FunFam Putative ATP-dependent RNA helicase DHX36 700 805 - -
Pumo10g02495 1157 Gene3D - 700 802 - -
Pumo10g02495 1157 FunFam DEA(D/H)-box RNA helicase family protein 1039 1125 - -
Pumo10g02495 1157 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 877 958 IPR011709 -
Pumo10g02495 1157 PANTHER ATP-DEPENDENT RNA HELICASE 213 976 - -
Pumo10g02495 1157 Pfam Helicase associated domain (HA2) 721 807 IPR007502 GO:0004386
Pumo10g02495 1157 CDD DEXHc_RHA-like 275 435 - -
Pumo10g02495 1157 SMART ha2_5 720 811 IPR007502 GO:0004386
Pumo10g02495 1157 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 269 436 IPR014001 -
Pumo10g02495 1157 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 524 698 IPR001650 -
Pumo10g02495 1157 MobiDBLite consensus disorder prediction 1124 1157 - -
Pumo10g02495 1157 MobiDBLite consensus disorder prediction 1037 1058 - -
Pumo10g02495 1157 Gene3D - 522 677 IPR027417 -
Pumo10g02495 1157 Pfam DEAD/DEAH box helicase 268 420 IPR011545 GO:0003676|GO:0005524
Pumo10g02495 1157 SUPERFAMILY dsRNA-binding domain-like 1051 1132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02495 Pumo-Chr10 42097810 42114301 Transposed