Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02494 ATGGCTTCCACCGCTCTCTCGTTCCACTTCCCATACCCAGCAACAACGCTCTCTCCCCACTCTCAACTTTCGCTCTCTCCACAACCTTCCCAATTCAAACCCTGCACCGTTGCTTCCCGCCAAATTCTCTGCATCTCCAACACCACCACCCTCTCTGTCTCTGCTTTCAGAAACTCAGACTCTCCAACTTTTCTCGCTACGGCTTCTGCCAAATCCGAGCCTATGGTCCCTCCTTACAACGTTTTGGTTACTGGCTCAACCAAAGGAATTGGGTATGCGTTGGCGAAAGAGTTTTTAAAAGCTGGTGACAACGTCCTGATTTGCTCAAGATCAGATGAAAGGGTAAAGACTGCTGTCCAGAACTTGAAAGAAGAATTTGGGGAGCAGCATGTGTGGGGAACTAAATGTGATGTGAGAAATGCAGAGGATGTGAAGAATTTAGTTTCATTTGCTCAAGAAAAACTGAAATACATTGATATATGGATCAACAATGCTGGATCAAATGCATATAGCCATAAGCCACTTGTTGAGGCTTCAGATGAAGATCTTGTTGAGGTGGTTACAACAAATACACTTGGTTTGATGATATGTTGTCGAGAGGCAATCAAGATGATGGTGAACCAACCTCGCGGAGGTCATATTTTCAGTATGGATGGAGCAGGTTCAGATGGAAGACCAACTCCTAGGTTTGCTGCGTATGGAGCAACAAAGAGAAGTGTGGTGCATTTAACAAAGTCATTACAGGTTACTAGTTTTGTGGTGTTTCATTGA 771 0.4462 MASTALSFHFPYPATTLSPHSQLSLSPQPSQFKPCTVASRQILCISNTTTLSVSAFRNSDSPTFLATASAKSEPMVPPYNVLVTGSTKGIGYALAKEFLKAGDNVLICSRSDERVKTAVQNLKEEFGEQHVWGTKCDVRNAEDVKNLVSFAQEKLKYIDIWINNAGSNAYSHKPLVEASDEDLVEVVTTNTLGLMICCREAIKMMVNQPRGGHIFSMDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQVTSFVVFH 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02494 256 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 220 248 IPR020904 GO:0016491
Pumo10g02494 256 CDD SDR_c 81 247 - -
Pumo10g02494 256 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 80 249 IPR036291 -
Pumo10g02494 256 Gene3D - 79 251 - -
Pumo10g02494 256 Pfam short chain dehydrogenase 81 248 IPR002347 -
Pumo10g02494 256 PRINTS Glucose/ribitol dehydrogenase family signature 233 252 IPR002347 -
Pumo10g02494 256 PRINTS Glucose/ribitol dehydrogenase family signature 156 167 IPR002347 -
Pumo10g02494 256 PRINTS Glucose/ribitol dehydrogenase family signature 80 97 IPR002347 -
Pumo10g02494 256 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 66 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02494 Pumo-Chr10 42089987 42094613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02494 81 246 Acyl Lipid Metabolism Gene Families AT1G24360 31.765 3.63e-14 69.3