Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02331 ATGCAATCTCAAATTCGTTCAGATACGTTTCCCTCTCACAATGGCAATGACCCAATTTCCTATTATGACCCAGCATTTCACTACTACAGCATTGACTCTGAAAGCAACCCAACATCAAAACAAGAAATCAACAACAACAACAACCGTGACCTTCTTCCTTCTCCCTCTCCCTCTCCTTTTTTGTCCTTTTTCCACTTTCCTTCTCCTCCTCATCATCCCTTTGAAGAAGACACTACTCAAATTTTCTTCCAACAACACCATGATTTTCTCCTTCAGTTTCACCATCAACAACCTCTCCCTCAAGACCCTGAAGAGCCTCAACCTGTTACTACCACCACCACCATGGAGGCTTCTTCTACTAAAAAGAGTTATAATCAGATCCCAAGAAAAAGACCTTGCAAGAGAGACAGGCACAGCAAGATCAACACTGCAAGAGGGTTGAGGGATCGGAGAATGAGGCTCTCCCTTGATGTTGCAAAGAGGTTTTTTGGGCTGCAAGACATGCTAGGCTTTGACAAAGCAAGCAAGACCGTGGAGTGGTTGCTGAACCAAGCAAAAGTTGAAATCAACCATCTAATAAAGGAGAAAAAGAAGCAGCAGCAGAAGCAGAAGAAGAAGAATGATCATCACAACAGTTGTAGCAGTTCTAGTTCTGAATGTGATGAAGAAGGTGTGTCTAGTCTTGATGAGGTTGTAGTGAGTAGAGATCAAGAACAACAAGAAGAAGAGAAGGTGGACAAAGTTGTGAAGAGAAGGGTCAAGAACTCTAGGAATAAGATTAGTGCATTCCACCCTCTTGCAAAGGAGTGTAGGGAAAGGGCAAGAGAGAGGGCAAGAGAGAGAACAAGAGAAAAGATGAGAAACCGTGGAATAGCTGACGAATCAAAGCAACGTAGAGAGGAAACAAATCAGGATCTGATCCAATTGGGTTCTTGGAACCCCTTTGAAACTGGTGGGGAAGAATCTGGTGCCAATATCAGTCACAACGTGCACCCTTCCTTGAACTTGATCACTGAGGCTAAAGAACAAAGCTACCACGCAAAGGAGCATGATGATGATGATGATGATGATTCTTTGGTTATTTTGAGCAAATGGAGCCCCTCCTTGATTTTCAATAACTCTGGATTTTCTCAATATCACCAATATGCAGAATTTCAGTACTTGGGAAAACCGTGGGAGGCCTAA 1185 0.4304 MQSQIRSDTFPSHNGNDPISYYDPAFHYYSIDSESNPTSKQEINNNNNRDLLPSPSPSPFLSFFHFPSPPHHPFEEDTTQIFFQQHHDFLLQFHHQQPLPQDPEEPQPVTTTTTMEASSTKKSYNQIPRKRPCKRDRHSKINTARGLRDRRMRLSLDVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEINHLIKEKKKQQQKQKKKNDHHNSCSSSSSECDEEGVSSLDEVVVSRDQEQQEEEKVDKVVKRRVKNSRNKISAFHPLAKECRERARERARERTREKMRNRGIADESKQRREETNQDLIQLGSWNPFETGGEESGANISHNVHPSLNLITEAKEQSYHAKEHDDDDDDDSLVILSKWSPSLIFNNSGFSQYHQYAEFQYLGKPWEA 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02331 394 MobiDBLite consensus disorder prediction 32 55 - -
Pumo10g02331 394 MobiDBLite consensus disorder prediction 272 303 - -
Pumo10g02331 394 MobiDBLite consensus disorder prediction 32 56 - -
Pumo10g02331 394 ProSiteProfiles R domain profile. 268 285 IPR017888 -
Pumo10g02331 394 Coils Coil 182 202 - -
Pumo10g02331 394 Pfam TCP family transcription factor 134 288 IPR017887 -
Pumo10g02331 394 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 117 311 IPR005333 GO:0003700
Pumo10g02331 394 MobiDBLite consensus disorder prediction 98 146 - -
Pumo10g02331 394 MobiDBLite consensus disorder prediction 195 225 - -
Pumo10g02331 394 MobiDBLite consensus disorder prediction 106 126 - -
Pumo10g02331 394 ProSiteProfiles TCP domain profile. 134 192 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02331 Pumo-Chr10 33654108 33656047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02331 57 282 TCP Transcription Factor Family AT3G18550 37.759 4.71e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo10g02331 TCP 2.8e-44 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02331 10 33654108 33656047 Pumo10g02331 10 33654108 33656047 ECH
Pumo10g02331 10 33654108 33656047 Pumo4g01139 4 14654232 14656027 ECH
Pumo10g02331 10 33654108 33656047 Pumo5g00611 5 11941193 11943063 ECH