Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02312 ATGTCAAAACTTCAGGTGAACCAACTGAATCAATTGAGAGAAATCTTTGCAAGATTCGACATGGATTCGGACGGGAGCCTAACGATCTTGGAACTCGCCGCGCTCCTCCGGTCGTTGGGGCTAAAGCCATCAGGGGACCAAATCCATGTGTTGTTGGCCAACATGGACTCAAATGGCAATGGCTTTGTGGAGTTTGATGAGTTGGTGGATGCAATATTGCATGACATAAGTGCAGAGATATTGTTGAACCAAGAAATGCTCTTGGGGGTGTTCAAATGTTTTGACCGTGATGGGAATGGTTACATAACAGCAGCAGAGTTAGCAGGGGCAATGGCCAAAATGGGTCAACCCCTTACGTATAGAGAACTCAGAGAGATGATCACAGAGGCTGACACGGATGGTGATGGGGTCATTAGTTTCAATGAGTTTGCCACTGTTATGGGTAGGTCAGCCTCTGACTTCTTAGGCTTTGCATTGTTGTAA 483 0.4638 MSKLQVNQLNQLREIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDSNGNGFVEFDELVDAILHDISAEILLNQEMLLGVFKCFDRDGNGYITAAELAGAMAKMGQPLTYRELREMITEADTDGDGVISFNEFATVMGRSASDFLGFALL 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02312 160 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Pumo10g02312 160 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Pumo10g02312 160 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Pumo10g02312 160 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Pumo10g02312 160 SMART efh_1 11 39 IPR002048 GO:0005509
Pumo10g02312 160 SMART efh_1 47 75 IPR002048 GO:0005509
Pumo10g02312 160 SMART efh_1 86 114 IPR002048 GO:0005509
Pumo10g02312 160 SMART efh_1 122 150 IPR002048 GO:0005509
Pumo10g02312 160 CDD EFh 86 147 IPR002048 GO:0005509
Pumo10g02312 160 FunFam Probable calcium-binding protein CML16 1 153 - -
Pumo10g02312 160 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Pumo10g02312 160 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Pumo10g02312 160 Gene3D - 1 151 - -
Pumo10g02312 160 SUPERFAMILY EF-hand 4 147 IPR011992 -
Pumo10g02312 160 PANTHER CALCIUM BINDING PROTEIN 84 147 - -
Pumo10g02312 160 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Pumo10g02312 160 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Pumo10g02312 160 Pfam EF-hand domain pair 87 147 IPR002048 GO:0005509
Pumo10g02312 160 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Pumo10g02312 160 CDD EFh 11 72 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02312 Pumo-Chr10 33279015 33279497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02312 7 159 EF-hand Containing Proteins AT1G18530 75.163 2.65e-83 240
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02312 10 33279015 33279497 Pumo10g02312 10 33279015 33279497 ECH