Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02271 ATGCAGGAAATACATTCCATCGGCGGCGGAAGGTTCCTCGGCGGCGGCGACTGGAGGCTGAGGCCGCACCACCAGAACCACCAGCAGCAGCCGCTAAAGTGCCCCCGCTGTGACTCGCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCGCGCCATTTCTGCAAGAACTGCCGCCGCTACTGGACCAAGGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGTTGCCGGAAGTCAAAACGCTCCAACAAGCCCAAAACCAACACCAACAGCAACCCTTCCTCTTCCACGGAAACCGCTCCTGCCACCGCGCCAACACCACTACAACCACCGCCGCCGGAGCTTGAGCACAATTCAAACTCTCACTCCAGCAGCGAAAGTTCCACCTTAACCGTGGCCGCCACGGAGGCGATGTCGGCGCCGCCGACATCAAACAACAACGATTTATTACTTGACAACAATCTTGAGTCGAAGATGTTCGCTAACCCTAATCCTAACCCCTCTTTGGAGCAGGGTGGCATTTTCTCTGAGATCGGAAACTTCACCAGCCTCATCAATTCAAATAGCGAAATATTGGGGTTTGGCTTTGCGAATAATAATAATAATAATAACAACAGCAGCATCCTCGACGCGACGTCGTTTCGGTTCGGTGTTAGTGTTACTCATCCGCACGGGAATGATCAGGTGCATGTGGCACCAGGTGGAGGCCATGGTCAGTGGCAACAACAACAACAACAGCAGAGTCATCATCAGGAGTTCGGTACGGCGTCGTTTCTCGACCACACTGTGCCGCTTGAGTTTTCTTCGCTGCAGCACAAGACTCGGCACCATGGAGGCTTTGGATCGTTGGATTGGCAACCCGGCTCGGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCAACCTTACTGGACCCACACTCAATGGTCTGATCAAGATAATAATCCCTCTCTCTTTCATCTTTCCTGA 987 0.536 MQEIHSIGGGRFLGGGDWRLRPHHQNHQQQPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKTNTNSNPSSSTETAPATAPTPLQPPPPELEHNSNSHSSSESSTLTVAATEAMSAPPTSNNNDLLLDNNLESKMFANPNPNPSLEQGGIFSEIGNFTSLINSNSEILGFGFANNNNNNNNSSILDATSFRFGVSVTHPHGNDQVHVAPGGGHGQWQQQQQQQSHHQEFGTASFLDHTVPLEFSSLQHKTRHHGGFGSLDWQPGSDQGLFDLPNTVDQPYWTHTQWSDQDNNPSLFHLS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02271 328 MobiDBLite consensus disorder prediction 120 155 - -
Pumo10g02271 328 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
Pumo10g02271 328 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Pumo10g02271 328 MobiDBLite consensus disorder prediction 90 108 - -
Pumo10g02271 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 251 IPR045174 GO:0003700|GO:0006355
Pumo10g02271 328 MobiDBLite consensus disorder prediction 1 33 - -
Pumo10g02271 328 Pfam Dof domain, zinc finger 30 86 IPR003851 GO:0003677|GO:0006355
Pumo10g02271 328 MobiDBLite consensus disorder prediction 76 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02271 Pumo-Chr10 31763237 31765616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02271 17 327 C2C2-Dof Transcription Factor Family AT5G60850 37.846 1.56e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo10g02271 zf-Dof 4.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02271 - - gmx:778116 421.779