Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01357 ATGTTCCCACATAGTTTTAATATTAGCAGTGCCGGGATTGAACAAATGTTGCATCCTCATCACATGCCAAACCCAATGGAACAACAACGTTCGAGGTGGAAACCCAGCGTTGAGGTGGCACCCAATTGCCCTCGCTGCGCTTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCTTGTCGCAGCCGCGCTATTTCTGCAAAGGCTGCAGGCGCTACTGGACCAATGGTGGCTCTCTCCGCAACGTCCCCGTCGGCGGTGGCTGCCGCAAAAACCGCCGCGGAAAGTCCTCGTCGCGGCACAGCCAAAGCCAACGCGCTTTTAGCTGCGTTTCCGAGGACACAGAGTCGTCATCAGTAGGTGATGCCCAACGAAGTAATAACGGGTCACGTGATATAGACATGGCCCTTGTCTTCGCCAAATTCTTGAACCCAAAACCAAGCACTGGTGAGGATAACAATGGCTCATCTTCGACTTCCAACAATTACTTAACACCGGAGAGCGTAGAAACTGAGAATGATGCAGTGGTTCAGTCCCAGAATAAGGCCTTATCGGATCCTGTTATTGTACAGTCTGAGAATTTTGGAGGGGAGGAGTTGAGTTTGGGTGAGATTGATGAGTTGGAGAGGTTACTAGGTGTGTGTGGTGATGAAGATGGTCTATGGTCTGATGCTACTTTGTCCTCTTCGGTTACTTGGGAACCACCATTGAAGGAAATGCAATTGCAGGAGTTGGAATACTCTATGGCGTTGAATGAGGATGATGGTCAATTATTACCCATCACTTCTGCATCTACAATGAGCGACTCTTGCTGGAGTAATTGGAGTTCCTTTGATCTTTCAACAATGGAAGTGTTCTCATCAAGTCCTTAA 876 0.4829 MFPHSFNISSAGIEQMLHPHHMPNPMEQQRSRWKPSVEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTNGGSLRNVPVGGGCRKNRRGKSSSRHSQSQRAFSCVSEDTESSSVGDAQRSNNGSRDIDMALVFAKFLNPKPSTGEDNNGSSSTSNNYLTPESVETENDAVVQSQNKALSDPVIVQSENFGGEELSLGEIDELERLLGVCGDEDGLWSDATLSSSVTWEPPLKEMQLQELEYSMALNEDDGQLLPITSASTMSDSCWSNWSSFDLSTMEVFSSSP 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01357 291 Pfam Dof domain, zinc finger 41 95 IPR003851 GO:0003677|GO:0006355
Pumo10g01357 291 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 174 IPR045174 GO:0003700|GO:0006355
Pumo10g01357 291 MobiDBLite consensus disorder prediction 102 130 - -
Pumo10g01357 291 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Pumo10g01357 291 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Pumo10g01357 291 MobiDBLite consensus disorder prediction 145 175 - -
Pumo10g01357 291 MobiDBLite consensus disorder prediction 85 130 - -
Pumo10g01357 291 MobiDBLite consensus disorder prediction 148 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01357 Pumo-Chr10 18022293 18023458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01357 33 228 C2C2-Dof Transcription Factor Family AT3G52440 44.444 3.20e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo10g01357 zf-Dof 2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01357 - - gmx:100806008 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01357 10 18022293 18023458 Pumo10g01357 10 18022293 18023458 ECH