Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01237 ATGCCAAATCCAAAGCACGTTTTGCACGGCACTCTCTTCCTCTCGCTACTTCTCCAGGCAGTGTCTAAATCCACGATCGAGCCATGCTCGAACTCGGACTCATGCAACGCGCTCCTAGGATACACCCTCTACACGGACCTCAAAGTCTCCGAAGTGGCGTCCCTGTTCCAAATCGACCCCATATCGCTCCTCACCGCGAACGCCATCGACATCTCCTACCCCGACGTGGAGCACCACATCCTCCCCTCCAAACTCTTCCTCAAAGTCCCCATCTCCTGCTCCTGCGTCGATGGCATTCGCAAATCCGTCGCCACCCACTACAAGACCCGCCCCTCCGACACCCTCTCCTCCATCGCCGACTCCGTCTACGGTGGCCTCGTCTCCTCCGACCAGCTCCGCGAGGCCAATTCCATCTCCGACCCTTCCGTTCTCGATGTCGGACAGAACCTCGTCGTTCCTCTCCCCTGCACCTGCTTCAACGGCTCCGATAACTCCCTCCCCGCGATTTACCTCTCTTATGTTGTTCGCCCCGTTGATACCCTGGCTGCCATTGCTGCCAGGTACTTCACCACTCTCACCGATTTGATGAATGTTAATGCCATGGGAAGCACTGCTATTAACGATGGCGATATCCTTGCTGTTCCAATACCCGCTTGTGCTTCGAATTTTCCGAAATCCGCCTCTGATTTTGGCTTACTTGTTCCTAATGGAAGCTATGCCATTACCGCGGGGCACTGTGTGCAGTGTAGCTGTGGACCGAAAAACCTTGATCTGTACTGTATGCCGGCTTCTTTGGCTGTTTCTTGCTCCAGCATGCAATGTAGAGGCAGCAACCTTATGCTTGGGAATGTTACCGTGCAGCAGACTAGTGGTGGTTGCAATGTAACTACTTGCAATTATGATGGCATTGTTAATGGCAGCATTGTAACAACGTTGTCCCCTTCTCTTCAGCCTCGATGTCCAGGGCCGCGGGAATTCCCTCCCCTCATTGCCCCACCTACATCTGTTGCAAGGGACATAGTGTTTGCACCAGCACCATCACCGCTATTTGATGGAGCCAGTCCAGCATCACCCAAATCGTCACTGGTGCCTTCAACAGGGCTTCCAGGAGGATTCTCTCCTGCAAATGGCCCTATTAGTGGCATTTCTTCTGGTGCTTCTGCTGCATGCTCCTTGGTGAAACCATTGCCCACTTTGACGTATGCACTTGTGTTATTGCTTGTCAAGTTGATGATACCTGTGGCATTGTAA 1251 0.5308 MPNPKHVLHGTLFLSLLLQAVSKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPISLLTANAIDISYPDVEHHILPSKLFLKVPISCSCVDGIRKSVATHYKTRPSDTLSSIADSVYGGLVSSDQLREANSISDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDTLAAIAARYFTTLTDLMNVNAMGSTAINDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPKNLDLYCMPASLAVSCSSMQCRGSNLMLGNVTVQQTSGGCNVTTCNYDGIVNGSIVTTLSPSLQPRCPGPREFPPLIAPPTSVARDIVFAPAPSPLFDGASPASPKSSLVPSTGLPGGFSPANGPISGISSGASAACSLVKPLPTLTYALVLLLVKLMIPVAL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01237 416 Pfam LysM domain 173 215 IPR018392 -
Pumo10g01237 416 Pfam LysM domain 107 153 IPR018392 -
Pumo10g01237 416 CDD LysM 172 214 IPR018392 -
Pumo10g01237 416 SUPERFAMILY LysM domain 171 216 IPR036779 -
Pumo10g01237 416 Gene3D LysM domain 99 158 IPR036779 -
Pumo10g01237 416 SMART LysM_2 172 215 IPR018392 -
Pumo10g01237 416 SMART LysM_2 106 153 IPR018392 -
Pumo10g01237 416 Gene3D LysM domain 159 226 IPR036779 -
Pumo10g01237 416 ProSiteProfiles LysM domain profile. 171 214 IPR018392 -
Pumo10g01237 416 SUPERFAMILY LysM domain 105 154 IPR036779 -
Pumo10g01237 416 ProSiteProfiles LysM domain profile. 105 152 IPR018392 -
Pumo10g01237 416 CDD LysM 105 152 IPR018392 -
Pumo10g01237 416 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 11 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01237 Pumo-Chr10 16281166 16283893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01237 15 391 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 72.105 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01237 - - gmx:100777292 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01237 10 16281166 16283893 Pumo10g01237 10 16281166 16283893 ECH