Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00333 ATGGCTCTGGAAGCTCTTCAATCACCCACCACAGCCACTCCTTCGTTTACTCCATTTGAAGAAGCCAATCTCAGTTACTTAGAGACACCATGGACCAAGGGAAAGCGTTCTAAGCGTAGCCGCATGGACCAACACCCTTCATGCACCGAGGAAGAGTACCTCGCTCTCTGTCTCATCATGCTCGCTCGCGGCGGCCCCGGTGGTGTCCCCGCCGCCATCCCCACCGCCATCCCCATCGCCAAGCCTGCTGTCTCCGACAACAACTCGGCGCCGCTACCCGCCGCCAAACTGAGCTACAAATGCTCCGTCTGCAACAAAGCCTTCTCCTCTTACCAGGCACTCGGCGGACACAAGGCCAGCCACCGGAAATTGGCCAGCGCCGCCGGCGAAGACCACTCGACCTCCTCCGCAGTGACGACGAGCTCGGCGTCGAACGGCGGAGGTAGGACCCACGAGTGCTCCATCTGCCACAAAACGTTCCCGACAGGACAGGCCTTGGGAGGACACAAACGTTGTCACTACGAAGGCGGTGGGAACAGCGCCGTAACCGCCTCTGAAGGTGTGGGGTCCACTCACACAGGAAGCCACCGCGATTTCGATCTCAATCTCCCTGCTTTTCCGGACTTTCCAACAAGGTTCTTCGCGGATGACGAGGTTTCCAGTCCTCATCCATCCAAGAAGCCCCGTCTCAATTTGACCATACCCAAGATTGAAATCCCTCAATACTAA 729 0.5789 MALEALQSPTTATPSFTPFEEANLSYLETPWTKGKRSKRSRMDQHPSCTEEEYLALCLIMLARGGPGGVPAAIPTAIPIAKPAVSDNNSAPLPAAKLSYKCSVCNKAFSSYQALGGHKASHRKLASAAGEDHSTSSAVTTSSASNGGGRTHECSICHKTFPTGQALGGHKRCHYEGGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDFPTRFFADDEVSSPHPSKKPRLNLTIPKIEIPQY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00333 242 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Pumo10g00333 242 Gene3D Classic Zinc Finger 97 173 - -
Pumo10g00333 242 MobiDBLite consensus disorder prediction 124 149 - -
Pumo10g00333 242 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 205 IPR044653 GO:0003700
Pumo10g00333 242 SMART c2h2final6 99 121 IPR013087 -
Pumo10g00333 242 SMART c2h2final6 151 173 IPR013087 -
Pumo10g00333 242 SUPERFAMILY beta-beta-alpha zinc fingers 99 173 IPR036236 -
Pumo10g00333 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 173 IPR013087 -
Pumo10g00333 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 121 IPR013087 -
Pumo10g00333 242 MobiDBLite consensus disorder prediction 129 149 - -
Pumo10g00333 242 Pfam C2H2-type zinc finger 151 174 - -
Pumo10g00333 242 Pfam C2H2-type zinc finger 99 123 - -
Pumo10g00333 242 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00333 Pumo-Chr10 4460379 4461658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00333 1 239 C2H2 Transcription Factor Family AT1G27730 53.386 9.47e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo10g00333 zf-C2H2_6 2.3e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00333 10 4460379 4461658 Pumo10g00333 10 4460379 4461658 ECH
Pumo9g00331 9 5198059 5199452 Pumo10g00333 10 4460379 4461658 PCT