Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00322 ATGTTGTGCGCTTGTTCTTCCGGGGAGCAATTCAAATTCGAAGACCCGCCACACTCGCCGGACTCCCTCGCCACCAGGGATTTCTCCGTCAGCGGACTCTCTTCCAGGACCGCCGAATGGGAACCCAAATTCGATGAAACTCAAGTAGAAGAAGCTGAATCTACTCTTAAAGAAGCTCTTTCCTTAAACTATGAGGAGGCTAGGGCTTTGTTGGGGAGGCTTGAATACCAGAGAGGGAATTTCGATGCTGCACTTCAAGTTTTTCAAGGTATAGACATCAAGGGTTTGACCCCAAGAATGATCAAGGCTATTGCTGAAAGAACCAAGCAAAGAAAACCACGTTCCAAGGCAGATATCGTGGTTCTGAATGTGATGTCATTGCATTCGGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCAAGATCGTTGGAGGAACTTGGGCGATGCATTGATGCTGCAAAGGAGTGCAGAATAATTCTGGATACGGTTGAATCTGCCCTTCCTAATGGAATGCCTGACGGTATTGGTGAAGATTGTAAGTTGCAAGAGATGTTTCATAAAGCATTGGAGTTGCTTCCAAGCCTTTGGATCAAGGCAGGGTTTCTAGATGAAGCTGTCACTGCATATCGTCGTGCTCTTGTCAAGCCATGGAATTTGGAGCCACGAAGGTTGGCTGCTGTGCAAAAAGATTTAGCTACGATGCTTCTCTACAGTGGTGTTGAAGTAAGCCTACCCTCTCAGTTGCAGCTGTGGGGTGAAACAACACCCAAGAGTAGTGTTGAAGAAGCAATACTTTTGCTATTAATACTCATGAGCAAGGTGGCAATTCGGGAAATAGAATGGGATGCTGAAATAATGGATCATCTTACTTTTGCACTTTCAGTGACTGGGATGTTTGAGTTATTGGCAGATCATGTAGAGCAGATCCTTCCAGGTATTTATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTGTGTTATAGTGCAGCAGGACATGATGAGGTAGCTTTGAACCTTTTGAGGAAGGCTTGCGGCAGTTCTGAAGCAAACCATAGACCCCATTTTCCTTCATTTTTGTTTGGAGCAAAACTCTGTTCCCAAGACCCTTGCCATGCTCATGAAGGCATTAACTTTTCACGTGAAGTCATTGATCTAGCTAAGAACCAAAATGAGCATTTTTTGGGTCAAGGCCACAAATTTCTTGGCGTCTGCTATGGGGCTGCGACTAGAATTTCTGTACTGGATTCTGAAAGAAGTATATTTCAAAGAGAGTCTTTGGACTCTCTAAACTGTGCTGCTGTAAATGGAAATGATGACCTGGAAGCGATATTCAGCCTTGGACTCGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTACAACAACATAATGATGTACTCAGACATGTCTGTTGGCAGTTCACGAGGTTGGCAGTTGTTAGCACTCATAGTATCTGCACAGCAGCGGTTTAAGGATGCTGAAACTGTAGTTGATTTTGCTTTAGATGAGGCTTGGGGGATGGATCAACTTGAACTTCTAAGATTGAAAGCAGTACTTCAAATTGCTCAGCAACAACCCAAGCAAGCAATAGAGACATATAGGATCTTGCTAGCACTAATTCAAGCAAAAAAAGAGCTTTGGGTTCAAGATAACAACGTTGATCAAGAACAAGCATTCAGGCATGAGGCATTAACAGAAAAGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATACAGATGTTGGTTCCTTGTTTGATGCAAAAACTTGTGTTGACAAAGCCCAGTTGATAGAATTTTTTTCTCCAAGAAGTTGGCATATTACAGGGATGTTGCTTGAAGCTCAATCATTACACAAAGAGGCATTTGTTTCCTTTTCAGTATCATTGTCAATAGAACCAGATTACATTCCCTGCATCATTTCAACTGCAGAATTGTTGATGAAACTTGGTATGCAATCACTTCCAATTGCAAAAAGTTTTTTAATGAACGCTTTACGATTAGAACCTACAAACCATGATGCTTGGTTCAAACTTGGATTGGTTTCAAAAATGGAAGGTTCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAACTGAAGCTTTCTGCTCCAGTGCAAAATTTAAGTAATTGA 2151 0.424 MLCACSSGEQFKFEDPPHSPDSLATRDFSVSGLSSRTAEWEPKFDETQVEEAESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLTPRMIKAIAERTKQRKPRSKADIVVLNVMSLHSVSLLLEAILLKARSLEELGRCIDAAKECRIILDTVESALPNGMPDGIGEDCKLQEMFHKALELLPSLWIKAGFLDEAVTAYRRALVKPWNLEPRRLAAVQKDLATMLLYSGVEVSLPSQLQLWGETTPKSSVEEAILLLLILMSKVAIREIEWDAEIMDHLTFALSVTGMFELLADHVEQILPGIYSRAERWYFLALCYSAAGHDEVALNLLRKACGSSEANHRPHFPSFLFGAKLCSQDPCHAHEGINFSREVIDLAKNQNEHFLGQGHKFLGVCYGAATRISVLDSERSIFQRESLDSLNCAAVNGNDDLEAIFSLGLENAIQRNLDAAYNNIMMYSDMSVGSSRGWQLLALIVSAQQRFKDAETVVDFALDEAWGMDQLELLRLKAVLQIAQQQPKQAIETYRILLALIQAKKELWVQDNNVDQEQAFRHEALTEKKLEMEAWQDLATIYTDVGSLFDAKTCVDKAQLIEFFSPRSWHITGMLLEAQSLHKEAFVSFSVSLSIEPDYIPCIISTAELLMKLGMQSLPIAKSFLMNALRLEPTNHDAWFKLGLVSKMEGSLQQAAEFFQAAYELKLSAPVQNLSN 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00322 716 Gene3D Tetratricopeptide repeat domain 43 242 IPR011990 GO:0005515
Pumo10g00322 716 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Pumo10g00322 716 SMART tpr_5 606 639 IPR019734 GO:0005515
Pumo10g00322 716 SMART tpr_5 318 351 IPR019734 GO:0005515
Pumo10g00322 716 SMART tpr_5 511 544 IPR019734 GO:0005515
Pumo10g00322 716 SMART tpr_5 676 709 IPR019734 GO:0005515
Pumo10g00322 716 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
Pumo10g00322 716 SUPERFAMILY TPR-like 48 345 IPR011990 GO:0005515
Pumo10g00322 716 Coils Coil 57 77 - -
Pumo10g00322 716 Pfam Tetratricopeptide repeat 48 90 - -
Pumo10g00322 716 SUPERFAMILY TPR-like 426 599 IPR011990 GO:0005515
Pumo10g00322 716 Gene3D Tetratricopeptide repeat domain 550 657 IPR011990 GO:0005515
Pumo10g00322 716 SUPERFAMILY TPR-like 563 706 IPR011990 GO:0005515
Pumo10g00322 716 Gene3D Tetratricopeptide repeat domain 258 542 IPR011990 GO:0005515
Pumo10g00322 716 Gene3D Tetratricopeptide repeat domain 658 712 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00322 Pumo-Chr10 4342094 4346321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00322 1 714 Calmodulin-binding Proteins AT1G27460 60.362 0.0 861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00322 10 4342094 4346321 Pumo10g00322 10 4342094 4346321 ECH
Pumo9g00342 9 5439493 5443244 Pumo10g00322 10 4342094 4346321 PCT