Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00888 ATGGACACAGCTCACTGGCCACAGGGTGTTGGAGTGGTTAAACCCATGGAAAGTTCAAGACCTATGTTGGAACGAAGTACCAGACCTCAGAAAGATCAAGCTTTGAATTGTCCCAGGTGTAATTCGACAAATACCAAGTTTTGTTACTACAACAATTACAGTCTCTCTCAGCCTAGATATTTTTGCAAAACCTGTAGAAGGTATTGGACTGAAGGTGGGTCTTTGAGGAGTGTTCCTGTAGGTGGTGGTTCAAGAAAGAACAAGAGATCGTCAACTTCATCTTCATCAAACTCAGGTTCTTCAAATAAAAAACTTATTCCTGATCATCATCATCTCATTTCTGTGTCAGGTCTAGCACAGTCTGCTTTACAACATCCTAAGATCGCTCGCAGTCAGGATCTCAACTTAACATTTCCACCGTCTGATAATCATGATTACAGTACTGTACCTAAATTTGTTGAGGTACCGTATAGTAGTACTGACGAGAAGAGGCAGCAAGTACTTCAGAACCCTAATTCCTCATCCGTAAATCCTCAGCTCTCAGCTGTGGAGCTTCTGAAGAGTACTGATATTACTTCTTCAAGGGTGTTTGGTTCTTTCGTGGGGATGCCTGTATCTGATTCTAGTGCGATGTACTCAGGTGGGTATTCACTGCAAGATTTCAAGCCTAGCCTGAATTTTTCTTCGGAGGGATTTGAAAATGGTTATGGAAGTCTTCCAGGTATACAAGATAGTACGGGTGCAAGGCTTTTGTTTCCAGTAGAGGAATTAAAGCAGGTTCCCACCACAACTGAGTTTGATCGACAGAATAGAAGCCAAGCAGATCAATCTACTTCTGGATATTGGAATGGCATGTTAGGTGGAGGATCATGGTAA 876 0.4224 MDTAHWPQGVGVVKPMESSRPMLERSTRPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRSVPVGGGSRKNKRSSTSSSSNSGSSNKKLIPDHHHLISVSGLAQSALQHPKIARSQDLNLTFPPSDNHDYSTVPKFVEVPYSSTDEKRQQVLQNPNSSSVNPQLSAVELLKSTDITSSRVFGSFVGMPVSDSSAMYSGGYSLQDFKPSLNFSSEGFENGYGSLPGIQDSTGARLLFPVEELKQVPTTTEFDRQNRSQADQSTSGYWNGMLGGGSW* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00888 291 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Pte8g00888 291 MobiDBLite consensus disorder prediction 76 105 - -
Pte8g00888 291 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 177 IPR045174 GO:0003700|GO:0006355
Pte8g00888 291 MobiDBLite consensus disorder prediction 1 33 - -
Pte8g00888 291 MobiDBLite consensus disorder prediction 263 285 - -
Pte8g00888 291 MobiDBLite consensus disorder prediction 262 291 - -
Pte8g00888 291 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Pte8g00888 291 Pfam Dof domain, zinc finger 32 89 IPR003851 GO:0003677|GO:0006355
Pte8g00888 291 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00888 Pte-Chr8 32355552 32357738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00888 1 291 C2C2-Dof Transcription Factor Family AT4G24060 38.617 2.57e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte8g00888 zf-Dof 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00888 - - vvi:100264143 345.895