Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte7g00806 ATGGGAAGAGGTAGGGTTCAGCTGAAGCGGATCGAGGACAAAATCAGTCGGCAAGTAACGTTCTCTAAACGCCGTACTGGGTTACTGAAGAAAGCTCGTGAAATCTCTGTGCTGTGCGATGCTCAGGTGGCTTTGATTGTTTTCTCTTCTAATGGAAAACTCTTTGAGTATTCTGCTCAGTCCAGCATGGAGATTGTCTTGGAACGTTACGAGAGAAAATCAAATCCAGAACAAGAGCTCTCTCAGGCTGATGTTGGACTACAGGGAAATTGGGTCAAAGACTTCCCCAAGCTCACGTCTAGAATGGAAGTTCTACAAAGGAATTTAAGGAACTGTCTGGGAGAAGAACTTGAACCAATGAGTTTGAGAGAGCTTCAACATTTGGAACTACAGCTTGAAGCAGCTCTAAAGCGCATTCGCATTCGCCAGAACAAACTCATGCATGAATCAATCGTGGAGTTGCAGAAAAAGGCCAAAGCTTTGCAAGAAGAAAACAATTTATTCGGAAAGAAGCGCACAGACGAGGAGCAAGAAAACAGCCTAGCCCTAGATTCACCTGTCTTCAACTTATCCCAACCACAGCAACTTGCTCTACCTATGGGACATAATTTTCAGGCCAGAGAAGCAGTTGATGAGGTGGCTGAAACTCAAATGCAGTCTAGAACCACAAATTCCATGCCACCATGGTTGCTGCATCATGTGAACAGATAG 711 0.4473 MGRGRVQLKRIEDKISRQVTFSKRRTGLLKKAREISVLCDAQVALIVFSSNGKLFEYSAQSSMEIVLERYERKSNPEQELSQADVGLQGNWVKDFPKLTSRMEVLQRNLRNCLGEELEPMSLRELQHLELQLEAALKRIRIRQNKLMHESIVELQKKAKALQEENNLFGKKRTDEEQENSLALDSPVFNLSQPQQLALPMGHNFQAREAVDEVAETQMQSRTTNSMPPWLLHHVNR* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte7g00806 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Pte7g00806 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte7g00806 236 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Pte7g00806 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte7g00806 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte7g00806 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte7g00806 236 Pfam K-box region 88 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte7g00806 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte7g00806 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte7g00806 236 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
Pte7g00806 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte7g00806 236 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Pte7g00806 236 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte7g00806 236 Coils Coil 125 171 - -
Pte7g00806 236 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte7g00806 Pte-Chr7 31542881 31551714 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte7g00806 K-box 9.6e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte7g00806 7 31542881 31551714 Pte7g00806 7 31542881 31551714 RCT
Pte7g00806 7 31542881 31551714 Pte3g00394 3 3254805 3258977 RCT
Pte7g00806 7 31542881 31551714 Pte1g00839 1 15340610 15349053 RCT
Pte7g00806 7 31542881 31551714 Pte4g00584 4 36495745 36500677 RCT
Pte4g00584 4 36495745 36500677 Pte7g00806 7 31542881 31551714 RCT