Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00500 ATGGGCTGCTTATGTTCTAAGGTTTCAGCTGTTGAAGATAGCCGTGAAGGTTTGACTAACAAATTGCCGTCATCAGCTAAAGGGTCATCGGAGCTGAAGGTACAGTTGACTTATGCCAGCAAAGATGGGGGAAATATGGAAAAAGAAAAGTCGCGTGGAAATCATATCGAAGTTTCGTCGGTAGAGAACAAAGATCACAGTTCAACGAAGTTATATCATGATCACCAATGCAGTGATGAGAAGGAAGGAGAGAAGCCCGATGTAACTGCTCATAAATTAAATAATCCTAGTATTGGAAGTGTCCCAAAGGCTTTAGAGGCAGAGCATGTTGCAGCTGGATGGCCAGCTTGGCTTTCTGCAGTTGCAGGTGAAGCGATCCATGGATGGGTACCACGGAGTGCTAATGCATTTGAGAAGCTGGACAAGATTGGCCAAGGGACTTATAGTAGTGTTTATAAGGCACATGATTTAGCGTACCAAAAAGTTGTTGCTTTGAAGAAAGTACGCTTTGATAATCTTGATCCTGAGAGTGTCAAATTTATGGCAAGGGAAATACTTGTTCTGCGTAGGCTTCAGCATCCAAATATTATAAAGTTGGAAGGACTGATAACTTCACAAATGTCGCGTAGCTTGTACCTTGTTTTTGAGTACATGGAACATGATCTTACTGGACTTGCATCAAGACCTGGTGTTAAGTTTTCTCAACCACAGGTAAAATGCTACATGAAGCAACTGCTTAGTGGACTGGATTACTGTCACAGGCATGGTGTCCTCCACCGTGACATAAAGGGATCCAATCTTCTTATTGACAATAATGGGATCTTAAAGATTGCAGACTTCGGTTTGGCAACTTTTTCCAATCCCGACCACAGTGTACCATTGACAAGTCGTGTGGTTACTCTATGGTACAGACCACCTGAACTCCTACTCGGAGCTTCTCATTATGGAGTTGCAGTGGATTTGTGGAGTGCTGGTTGCATACTTGGAGAAATATATGCTGGCAAGCCTATATTGCCTGGGAAAACTGAGGTTGAGCAATTACATAAGATCTTTAAGCTGTGTGGCTCACCTTCTGAAGACTATTGGGGAAGACTGAGGTTACCACGTGCATCTGTATTCAAGCCTCCACACCATTATCGGCGTTGTATTGCTGATACTTTCAAGGAACTTCCAGCTGTTGCAGTGAGGCTCATTGAGACGTTAATTTCCATAGACCCTGCAAGTCGAGGGACAGCAACAGCTGCTCTTGAAAGTGAGTTTTTCACAACAGAACCCCTGGCTTGTGATCCTTCAACGTTACCAAGATACCCTCCCAGCAAAGAGATTGATGCCAAATTGCAGGGTGAAGTTTGCAGAAGGCAAGGACCAAGCGGAGTTAGGCAGCTGAAATTTGGCTTAGGAACTCTACCAGAAAAAGAAGCTTCTGGAGTTCCTGCAGCAAAAATTAATAAGGAGAAAACCACGTCAATACAGAGAATTCAAGCCCATTCCAGTTCAACAAGCCATAGTCAATTGCACAATGGGCACAAGAATAAGTCTCTTTCTGGTCTTCTGGTTGTTCCATCTAAAGAGTCAGATCATGTGAAAGAAATCACGTTAGATCACCCAGAACATCCCTGCGAGAGGCCATCATTTTCAGGACCATTAGTTCAAGGTGGTGGATGGACAAAGGCTGGGAAGGAAGTTGATGCCCAGTCCATGTCTGCAGACACGGTGAAATTATCAAACTTCTCAAGTTTAGTAGCAACAAAAATGCAGTCATGTCAAGACAAGCAAGAAAAAAGAGGTTCTGCACAACATGAGAAAACAATCCAACATGGAAGGTGTATAGACTCTATGGATGGATCACAGTCACGGTGGTGGCAAGATCAAAGGCATCAAAGTCAGAGAGTTGGATATTTCTATCATCATGATGATGAAAGACTCAGTACAAAAGATGCATCTGGGGAAGTTCTTGGATCAAGGGGTGACAGGATATATGTTTCTGGTCCCTTACTTTTTCCATCAAACAATGTGGATCAGATCCTTAAAGACCATGATCAGAGGATACGGCAATTTTCACGACGAGCTCGAATCGACAAGACGAGAGGTCAGAAAGTTTAG 2103 0.4337 MGCLCSKVSAVEDSREGLTNKLPSSAKGSSELKVQLTYASKDGGNMEKEKSRGNHIEVSSVENKDHSSTKLYHDHQCSDEKEGEKPDVTAHKLNNPSIGSVPKALEAEHVAAGWPAWLSAVAGEAIHGWVPRSANAFEKLDKIGQGTYSSVYKAHDLAYQKVVALKKVRFDNLDPESVKFMAREILVLRRLQHPNIIKLEGLITSQMSRSLYLVFEYMEHDLTGLASRPGVKFSQPQVKCYMKQLLSGLDYCHRHGVLHRDIKGSNLLIDNNGILKIADFGLATFSNPDHSVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSAGCILGEIYAGKPILPGKTEVEQLHKIFKLCGSPSEDYWGRLRLPRASVFKPPHHYRRCIADTFKELPAVAVRLIETLISIDPASRGTATAALESEFFTTEPLACDPSTLPRYPPSKEIDAKLQGEVCRRQGPSGVRQLKFGLGTLPEKEASGVPAAKINKEKTTSIQRIQAHSSSTSHSQLHNGHKNKSLSGLLVVPSKESDHVKEITLDHPEHPCERPSFSGPLVQGGGWTKAGKEVDAQSMSADTVKLSNFSSLVATKMQSCQDKQEKRGSAQHEKTIQHGRCIDSMDGSQSRWWQDQRHQSQRVGYFYHHDDERLSTKDASGEVLGSRGDRIYVSGPLLFPSNNVDQILKDHDQRIRQFSRRARIDKTRGQKV* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00500 700 PANTHER CELL DIVISION PROTEIN KINASE 135 426 - -
Pte6g00500 700 MobiDBLite consensus disorder prediction 14 33 - -
Pte6g00500 700 SUPERFAMILY Protein kinase-like (PK-like) 130 427 IPR011009 -
Pte6g00500 700 ProSiteProfiles Protein kinase domain profile. 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g00500 700 CDD STKc_CDK9_like 137 421 - -
Pte6g00500 700 MobiDBLite consensus disorder prediction 43 70 - -
Pte6g00500 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Pte6g00500 700 FunFam probable serine/threonine-protein kinase At1g54610 124 219 - -
Pte6g00500 700 MobiDBLite consensus disorder prediction 39 70 - -
Pte6g00500 700 SMART serkin_6 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g00500 700 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524
Pte6g00500 700 FunFam probable serine/threonine-protein kinase At1g54610 220 461 - -
Pte6g00500 700 MobiDBLite consensus disorder prediction 18 33 - -
Pte6g00500 700 Gene3D Transferase(Phosphotransferase) domain 1 220 456 - -
Pte6g00500 700 Pfam Protein kinase domain 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g00500 700 Gene3D Phosphorylase Kinase; domain 1 124 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00500 Pte-Chr6 6425245 6432076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00500 129 461 Core Cell Cycle Gene Families AT5G10270 50.430 4.25e-114 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pte6g00500 Pkinase 2.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00500 - - qsa:O6P43_028820 854.744