Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00254 ATGAATTTCTCTTCCATTCCAGCTTATCTTGATCCAGCCAACTGGCAACAGCAATCGAATAATCCACTAGGTATTAGCAGTGAAGCTAGCTCTCAGCTTCTTCCGCCACCACCAACACCTCTACCTCCACAAACTCAAGAACCTCAGTCACATGGAGCCAGTGGTACAGGCTCGGTTAGACCGGGTTCGATGGTGGATAGAGCTCGAATGGCCAACATACCTATGCCTGAGACTGCATTGAAATGCCCAAGATGTGAATCTACAAACACCAAATTTTGTTACTTCAATAACTACAGTCTCTCCCAGCCCCGCCACTTCTGCAAGACCTGTAGAAGGTATTGGACAAGAGGAGGAGCCATGAGAAACGTTCCTGTCGGAGGCGGGTGCCGGCGGAACAAGAGAAGCAAAGGAAGTAGCTCAAAATCTCCAGCCAGCTCAGATCGCCAAACTGGTAGTACTGCTAGTTCTACAAACTCTATTTCTTCAAATACTGGTACTACAGCTGAGCTACTAGGCCTGACATCTCAAATGCCACCTTTGAGGTTTATAGCTCCAATGAGCCATCACTTAAGTGAGTTTGCAGCTGGAGAACTGGGCTTAAGTTATGGCCTGAGCTACAACCCGGTGTCCGCTCCAATGGGAGGGATAGGTGACTTCACTTTTCAGATAGGAGGTGCTTTGGGTGTAACTGGTGGCACTAGCTCCTTGGTGTCTGCCTCTGGTTTGGAGCAATGGAAATTGCAAGAAACACAGCAGTTTCCACTCTTGGCTGGTTTGGAAACATCATCGACAGGGCTATACCCTTTTGAAAGTCATGGGGTTGATACTTCAGTATATGGTGGAATGAGTCATATAAGGCCAAAACAAACAAGTACGTCAGGGTTGATATCTCAAATGGCCTCAGCTAAAATGGAGGAGAGTCAAGAAATGAATTTGTCAAGGCAATTATTGGGGATCAACGACAATCAATTGCAAGCAACTGATCCTCAGTATTGGACTAGTGGCGCCAATGCAACATGGACTGATCTTTCTGTTAATTTTAGCTCTTCCTCCACCACTAGCAATATCCTCTAA 1074 0.4637 MNFSSIPAYLDPANWQQQSNNPLGISSEASSQLLPPPPTPLPPQTQEPQSHGASGTGSVRPGSMVDRARMANIPMPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRNKRSKGSSSKSPASSDRQTGSTASSTNSISSNTGTTAELLGLTSQMPPLRFIAPMSHHLSEFAAGELGLSYGLSYNPVSAPMGGIGDFTFQIGGALGVTGGTSSLVSASGLEQWKLQETQQFPLLAGLETSSTGLYPFESHGVDTSVYGGMSHIRPKQTSTSGLISQMASAKMEESQEMNLSRQLLGINDNQLQATDPQYWTSGANATWTDLSVNFSSSSTTSNIL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00254 357 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 50 248 IPR045174 GO:0003700|GO:0006355
Pte6g00254 357 MobiDBLite consensus disorder prediction 1 63 - -
Pte6g00254 357 MobiDBLite consensus disorder prediction 138 163 - -
Pte6g00254 357 Pfam Dof domain, zinc finger 79 134 IPR003851 GO:0003677|GO:0006355
Pte6g00254 357 ProSiteProfiles Zinc finger Dof-type profile. 80 134 IPR003851 GO:0003677|GO:0006355
Pte6g00254 357 MobiDBLite consensus disorder prediction 1 32 - -
Pte6g00254 357 ProSitePatterns Zinc finger Dof-type signature. 82 118 IPR003851 GO:0003677|GO:0006355
Pte6g00254 357 MobiDBLite consensus disorder prediction 121 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00254 Pte-Chr6 2684752 2686396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00254 1 271 C2C2-Dof Transcription Factor Family AT2G37590 43.537 4.78e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte6g00254 zf-Dof 5.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00254 - - tcc:18597775 363.229