Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g01106 ATGCAAGACCCAGCAGCGTTTCCTCAGCTGAAACCTCATTTCCCAGAGCAAGAAAAGCTCAAATGCCCTCGATGTGACTCCATAAACACCAAATTCTGTTACTACAACAACTACAACCTCTCACAGCCTCGCCATTTTTGCAAGAATTGCAGGAGGTACTGGACTAAAGGTGGTGCTCTGAGGAACATTCCAGTTGGGTGTGGCAGCAGAAAGAACTCAAAGAAACCATTCACCAAGAAGGGTTCTGCTTCATCACCATCTTCATCCTCTTCCCCATCTACCTCATCAGTAGTAGCAGCCTCTACAACTCAGGACACTGTCCCGGATCCTGACCTGACCCGTATCCAAAGCAACCCAATTGATCAGGAGAAGCGATTGCTGGATATCAGTGGGAGCTTCAGTTCACTTCTTGGAACAAATGGTCATTTTGGCAGTCTCTTAGATGGTCTGAATTCAAGTGGGTCGTGTATGAAAATGATGCCCATTAGTGAAATGCCTGAAAACTTGAACTCGGGTCCATCATTCAATCCGGTTGTGGGCCAAAGTACTTTTCAGATGCAGAGCAATAATCATTCAGAGTGCTCTCTGGGCATACAAACTGGCGATTCAAGTTGTTGGAACAATGGCAGTACTTGGTCTGGTCTGGCAATTTACACATCTGGTTCAAGTTTATCAGTAGAAGCAGAGAGGGGGAAGGGCAACTATTTTGTCTGA 714 0.4594 MQDPAAFPQLKPHFPEQEKLKCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGCGSRKNSKKPFTKKGSASSPSSSSSPSTSSVVAASTTQDTVPDPDLTRIQSNPIDQEKRLLDISGSFSSLLGTNGHFGSLLDGLNSSGSCMKMMPISEMPENLNSGPSFNPVVGQSTFQMQSNNHSECSLGIQTGDSSCWNNGSTWSGLAIYTSGSSLSVEAERGKGNYFV* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g01106 237 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Pte4g01106 237 MobiDBLite consensus disorder prediction 78 118 - -
Pte4g01106 237 MobiDBLite consensus disorder prediction 71 118 - -
Pte4g01106 237 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Pte4g01106 237 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Pte4g01106 237 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 192 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g01106 Pte-Chr4 42140902 42142829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g01106 9 147 C2C2-Dof Transcription Factor Family AT1G51700 51.724 4.17e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte4g01106 zf-Dof 4.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g01106 - - ming:122064379 256.529