Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00824 ATGGCAGAACGTATAGTTGGAACGGGTTCTTTTGGAGTTGTTTTTCAGGCTAAGTGCTTGGAAACTGGTGAGATAGTTGGCATAAAGAAAGTGCTGCAGGACAAGAGATATAAAAACAGGGAACTCCAAGTCATGCGGATGCTTGATCATCCTAATGTTGTCCAAATGAAGCACTGCTTCTATTCAACTACTGACAAAAATGAGGTGTACCTTAACCTAGTCATGGAGTATATACCGGAAACTGTTTATAAAGTTTCTAAACACTATGTCCGGATGCACCAAAACATGCCTATTATTAATGTGCAGCTTTATACATACCAGATATGCCGTGCTCTAAATTATATGCATCATGTAATTGGTGTGTGTCATCGAGACATCAAGCCTCAGAACTTACTGGTTAATCCTCGTACCCACCAGCTAAAAATATGTGATTTTGGGAGTGCCAAGATGTTGGTGCCAGGTGAACCCAACATATCATATATATGCTCACGTTACTACAGGGCACCAGAACTTATTTTTGGGGTTACAGAGTACACAACTGCTATTGATATATGGTCAGTTGGCTGTGTTTTGGCTGAGCTTATTCTTGGACAGCCTTTGTTTCCCGGGGAGAGTGGTGTTGATCAGCTAGTGGAAATAATTAAGATTTTGGGGACACCAACCCGAGAAGAGATAAAGTGTATGAATCCTAATTACACCGAATTTAAGTTCCCACAGATTAAAGGTCAACCTTGGCACAAGGTTTTTCCCAAGAGATTGCCTCCTGAAGCAGTGGATCTCGTCTCAAGGCTGCTTCAATATTCACCAAATTTGCGCTGCACTGCTTTGGAGGCATGTGCACATCCCTTCTTTGATGATCTGAGAGACCCCAATGCTTGCTTGCCAGATGGGCGACCACTACCTCCTTTATTCAATTTCACTGCTCAAGAACTTGCTGGAGCACCGGTTGAGTTGCGAAATCGGCTCATTCCCAATCACGCTAAGAATTAA 990 0.4263 MAERIVGTGSFGVVFQAKCLETGEIVGIKKVLQDKRYKNRELQVMRMLDHPNVVQMKHCFYSTTDKNEVYLNLVMEYIPETVYKVSKHYVRMHQNMPIINVQLYTYQICRALNYMHHVIGVCHRDIKPQNLLVNPRTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGVTEYTTAIDIWSVGCVLAELILGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKGQPWHKVFPKRLPPEAVDLVSRLLQYSPNLRCTALEACAHPFFDDLRDPNACLPDGRPLPPLFNFTAQELAGAPVELRNRLIPNHAKN* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00824 329 SMART serkin_6 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00824 329 FunFam Shaggy-related protein kinase kappa 80 328 - -
Pte4g00824 329 FunFam Glycogen synthase kinase-3 beta 1 79 - -
Pte4g00824 329 SUPERFAMILY Protein kinase-like (PK-like) 4 310 IPR011009 -
Pte4g00824 329 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 328 - -
Pte4g00824 329 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Pte4g00824 329 Pfam Protein kinase domain 3 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00824 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Pte4g00824 329 ProSiteProfiles Protein kinase domain profile. 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00824 329 Gene3D Transferase(Phosphotransferase) domain 1 80 328 - -
Pte4g00824 329 CDD STKc_GSK3 3 287 IPR039192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00824 Pte-Chr4 39357668 39362723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00824 6 292 Core Cell Cycle Gene Families AT1G76540 35.593 5.29e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Pte4g00824 Pkinase 1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00824 K27414 - qsa:O6P43_017567 624.78