Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00614 ATGGCCTTGCATTCAGCTAGTCCACCAGCTCCAAGTGCTGAAGTGGTTGGGAATGCTTTTGTTGAGCAGTATTACCATATCCTCCATCAGTCACCAGAGTTAGTGCACCGATTTTATCAGGATTCCAGTGTGCTTAGTAGACCTGACCCTGATGGTGTGATGAAATCTGTCACAACCATGCAAGGTATCAATGATAAGATTCTTTCCTTAAACTTCAAAGAGTATAAGGCAGAGATAAAGACTGCCGATGCCCAGAAATCTCATAAAGAAGGAGTGACTGTGTTGGTGACAGGATGTTTAATAGGCAAGGATAACTTGAGAAGAAAATTTGCACAATCTTTCTTTCTGGCACCACAAGACAATGGCTATTTTGTCCTTAATGACATCTTTAGGTTTGTTGAAGATACCGAACCCTTGGAGACACATTCAGTAAATAGAGTTAATGAAGTTCCAATAACTTCAGAAACAGAGCATGTTAATGTCACCAATACTCCACCAGATCCGATAAATTCACATGTGGTTGAAGATCAAAATGTTGTTGAGAATGCATATGAGTCATCGGATCATGTGAGACAGCTGACTAATGAAAATGAGCCAGTTGTTGAAATACATTCTCATCCTAATGGGTCCGAAGCTTCTGAAACTCCAGAATTGTCTTCTTCATCCCTGGAAAATGCTCCAAAGAAATCTTATGCATCAATTGTGAAAGTGCCTAAGGGAAGCTCAGGACCAACAAGAGTATATGTACCTACGAACAATGTAAAGGTGGCTCCACAGATAACAGAAAATCTATCAGTTGAAGAAGCAGACAGTGCCTTGCCTGAAGCATCATCAGTTAATGTTGAGATTCCTGAAAGAAATGATACTCATGAGGAAGTTAAGGGCTACTCCATCTACATCCGCAATCTACCTTTACATGTCACAGTTGCTCAATTGGAGGCTGAATTCAAGAAATTTGGACCTATCAAGCAAGATGGCATTCAAGTCAGAAATAACAAGCAACAGGGTTATTGTTTTGGCTTCGTTGAATTTGAGTCCTGGAGCTCAATGAATAAGGCACTTCAGGCTTCTCCAATTAATATCGGTGGTCGTCATGCAGTAGTTGAGATTAAAAGAACCACCACTCGAGTTGGAAGTAGCAACACAGGGAGAGGTAGATTCTTATCTGGAAGAGGTGGATATAGAGCTGACAATTTCAGGCCCCGTGGAGCTGGAAATTATGGTGGTGGTGCTATCAGGGGCTATGTCAGACAAGAATATGGGATCCGGGGTGAATTTTCTGGTAGAGGTCGAGTCCCCACTGGTCGTGGTGGCGACATTAATCAGCAAGGCAGAGGGAGAGGTATTCGTCCTAGTGCACCAAATCTAGCACCTGTTGCTCTACCTGATTAG 1392 0.4239 MALHSASPPAPSAEVVGNAFVEQYYHILHQSPELVHRFYQDSSVLSRPDPDGVMKSVTTMQGINDKILSLNFKEYKAEIKTADAQKSHKEGVTVLVTGCLIGKDNLRRKFAQSFFLAPQDNGYFVLNDIFRFVEDTEPLETHSVNRVNEVPITSETEHVNVTNTPPDPINSHVVEDQNVVENAYESSDHVRQLTNENEPVVEIHSHPNGSEASETPELSSSSLENAPKKSYASIVKVPKGSSGPTRVYVPTNNVKVAPQITENLSVEEADSALPEASSVNVEIPERNDTHEEVKGYSIYIRNLPLHVTVAQLEAEFKKFGPIKQDGIQVRNNKQQGYCFGFVEFESWSSMNKALQASPINIGGRHAVVEIKRTTTRVGSSNTGRGRFLSGRGGYRADNFRPRGAGNYGGGAIRGYVRQEYGIRGEFSGRGRVPTGRGGDINQQGRGRGIRPSAPNLAPVALPD* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00614 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 373 IPR000504 GO:0003723
Pte4g00614 463 CDD NTF2 12 134 IPR018222 -
Pte4g00614 463 SUPERFAMILY NTF2-like 12 133 IPR032710 -
Pte4g00614 463 Gene3D - 6 136 - -
Pte4g00614 463 ProSiteProfiles Nuclear transport factor 2 domain profile. 16 132 IPR018222 -
Pte4g00614 463 SMART rrm1_1 297 369 IPR000504 GO:0003723
Pte4g00614 463 CDD RRM_SF 298 356 - -
Pte4g00614 463 Gene3D - 284 404 IPR012677 -
Pte4g00614 463 MobiDBLite consensus disorder prediction 426 463 - -
Pte4g00614 463 SUPERFAMILY RNA-binding domain, RBD 286 401 IPR035979 GO:0003676
Pte4g00614 463 MobiDBLite consensus disorder prediction 202 227 - -
Pte4g00614 463 Pfam Nuclear transport factor 2 (NTF2) domain 16 132 IPR002075 -
Pte4g00614 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 356 IPR000504 GO:0003723
Pte4g00614 463 MobiDBLite consensus disorder prediction 208 227 - -
Pte4g00614 463 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 12 428 IPR039539 -
Pte4g00614 463 FunFam Nuclear transport factor 2 family protein 7 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00614 Pte-Chr4 36992271 36997017 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g00614 4 36992271 36997017 Pte4g00614 4 36992271 36997017 RCT