Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00584 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTTACTTTTGCAAAGAGGAGAAATGGTTTGCTCAAGAAAGCCTATGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTGATCATCTTCTCTAACCGTGGCAAGCTTTATGAGTTCTGCAGTAGTCCTAGCATGCTCAAAACGCTGGAAAGGTACCATAAGTGCAGCTACGTTGCAGTTGAAGTCAGCAATAAACCTACCAAAGAACTTGAGACAAGCTACCGTGAGTATGTGAAGCTGAAAACAAGGTTTGAGTCCCTTCAAAGAACCCAAAGAAACCTTCTTGGTGAAGACTTAGGTCCACTCAACACCAAAGACCTCGAGCAGCTTGAGCGTCAGCTAGAAGCATCCTTAAAGCAAGTGAGGTCCACGAAGACTCAGTTCATGCTGGACCAGCTTTCTGATCTGCAGAACAAGGTACGGATACACAGCAACATGTTTGAAAATGCAACTCACCCACTCGATGAAATTAATTCAAGGCATCACCTTCGTCAACCATGGGAAGCAGCTGGAGATCAAAGAATGTCATTTGCTCAACCTCATGGCTTCAGCTTTCAGCCTTTAGACTGCAACCCCACGCTGCAAATAGGGTACAATGCTGTGCCATCAGATCAGATGACTGCAACATCTCCTGTTCCACAAGTCAGTGGCTTCATACCTGGATGGATGCTTTGA 729 0.4554 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSMLKTLERYHKCSYVAVEVSNKPTKELETSYREYVKLKTRFESLQRTQRNLLGEDLGPLNTKDLEQLERQLEASLKQVRSTKTQFMLDQLSDLQNKVRIHSNMFENATHPLDEINSRHHLRQPWEAAGDQRMSFAQPHGFSFQPLDCNPTLQIGYNAVPSDQMTATSPVPQVSGFIPGWML* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00584 242 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Pte4g00584 242 Coils Coil 122 145 - -
Pte4g00584 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte4g00584 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte4g00584 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte4g00584 242 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pte4g00584 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Pte4g00584 242 ProSiteProfiles K-box domain profile. 88 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte4g00584 242 FunFam MADS-box transcription factor 1 13 87 - -
Pte4g00584 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte4g00584 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte4g00584 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte4g00584 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte4g00584 242 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Pte4g00584 242 Pfam K-box region 85 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00584 Pte-Chr4 36495745 36500677 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte4g00584 K-box 1.4e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g00584 4 36495745 36500677 Pte4g00584 4 36495745 36500677 RCT
Pte4g00584 4 36495745 36500677 Pte3g00394 3 3254805 3258977 RCT
Pte4g00584 4 36495745 36500677 Pte1g00839 1 15340610 15349053 RCT
Pte7g00806 7 31542881 31551714 Pte4g00584 4 36495745 36500677 RCT
Pte4g00584 4 36495745 36500677 Pte7g00806 7 31542881 31551714 RCT