Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01975 ATGCTAAACCAAAAACCCATTTTCTGCAATGCTGTGTTCGTTTTCATTTGGTTAACTTTGGCTAACGTGGTTCTGGTTATCTGTAAGTCCACCATCGAACCTTGTTCAAACTCAGATTCCTGTAATGCTCTTCTTGGCTACAAGCTATACACTGACCTCAAGGTAGCAGAGGTTGCCTCCATCTTCCAAGTTGATACCGTTGCTATTCTTACTGCTAATGCTATTGACATTTCATACCCTGATGTTGAAAACCATATCCTTCCTTCTCAACTCTTCTTGAAAATTCCCATAACCTGTGCTTGTGTTGATGGGATTCGCAAATCTGTGTCAACCCAATACAAAACTCGTCCCTCTGACACCCTCTCGTCCATTGCTGACTCCATATATGGGGGTTTGGTTTCGGCTGATCAAATTAGAGAGGCTAATGCGATAACAGATCCATCAGTGCTCGATGTTGGTCAGAACCTGGTCGTTCCTCTTCCTTGTACTTGCTTCAACGGGACTGATAATGGATTGCCTGCGATATACTTGTCATACGTGGTGCGGCCAATTGATACCTTGGCTGCCATTGCTTCGAGATATTCAACCACTCTTACTGATTTGATGAATGTTAATGCAATGGGGAGTGCAGCAATCAAAGATGGTGATATACTTGCTGTTCCGATTCCTGCTTGTGCATCAAGATTTCCAAGATCCGCCTCAGACGTGAGCTTGATTGTTCCTAATGGGAGTTACGCCATTACAGCAAGTCACTGTGTACAATGCAGTTGTGGCCCTGGGAATCTCAACTTGTATTGCATGCCTGCGTCATTGGCCGTTTCTTGTTCCAGTATGCAATGTAGAAACAGCAACCTAATGCTTGGGAATGTCACTGCTCAACAAAATAGTGGCGGTTGTAATGTGACATCATGTCTTTATGACGGTTATGTTAATGGGACAATAATGACAATGTTGTCATCATCTCTTCAACCTCGATGTCCTGGACCACAGCAATTCCCACCTCTTATTGCCCCACCAACTTCGGTGCCGAGGGAGTCAATTTTTGCACCTGCACCATCACCTCAGTTTGATGGTGCTGGGTCCACAGAACCCAGATCTTCTATAGTGCCTCCTACCGGTTCTCTGTCAGGGTTCCCAAGGGCTAATGGCCCTGCAGGGAGTGTTGTTGGTTCTACTGCTTCTTCAGATGCTCGATCCTTGATGAATCCACTATCTGTCTTCACACTTATATTTTGGTCTTGTGCTAAATTAGTGATTCCAGGGCTGTGGTAA 1272 0.4489 MLNQKPIFCNAVFVFIWLTLANVVLVICKSTIEPCSNSDSCNALLGYKLYTDLKVAEVASIFQVDTVAILTANAIDISYPDVENHILPSQLFLKIPITCACVDGIRKSVSTQYKTRPSDTLSSIADSIYGGLVSADQIREANAITDPSVLDVGQNLVVPLPCTCFNGTDNGLPAIYLSYVVRPIDTLAAIASRYSTTLTDLMNVNAMGSAAIKDGDILAVPIPACASRFPRSASDVSLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCRNSNLMLGNVTAQQNSGGCNVTSCLYDGYVNGTIMTMLSSSLQPRCPGPQQFPPLIAPPTSVPRESIFAPAPSPQFDGAGSTEPRSSIVPPTGSLSGFPRANGPAGSVVGSTASSDARSLMNPLSVFTLIFWSCAKLVIPGLW* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01975 423 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 16 330 - -
Pte3g01975 423 SUPERFAMILY LysM domain 177 222 IPR036779 -
Pte3g01975 423 Gene3D LysM domain 173 228 IPR036779 -
Pte3g01975 423 Gene3D LysM domain 107 167 IPR036779 -
Pte3g01975 423 MobiDBLite consensus disorder prediction 359 373 - -
Pte3g01975 423 CDD LysM 178 220 IPR018392 -
Pte3g01975 423 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Pte3g01975 423 Pfam LysM domain 179 221 IPR018392 -
Pte3g01975 423 Pfam LysM domain 113 159 IPR018392 -
Pte3g01975 423 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Pte3g01975 423 MobiDBLite consensus disorder prediction 347 392 - -
Pte3g01975 423 SMART LysM_2 112 159 IPR018392 -
Pte3g01975 423 SMART LysM_2 178 221 IPR018392 -
Pte3g01975 423 CDD LysM 111 158 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01975 Pte-Chr3 31551176 31555164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01975 4 395 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 71.827 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01975 - - qsa:O6P43_019748 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01975 3 31551176 31555164 Pte3g01975 3 31551176 31555164 ECH