Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00394 ATGGGGAGGGGAAGAGTGCAGTTGAAGAGGATAGAGAACAAAATCAACAGGCAAGTCACTTTCTCTAAGAGAAGATCGGGATTGCTCAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCTGAGGTCGCCTTGATTGTCTTTTCAACCAAAGGCAAGCTCTTTGAGTATTCCAGTGATTCCTGCATGGAAAGAATTCTTGAACGTTATGATAGGTATTCACAAGCGGAGAAGCAGATGATTCCTAATGATCATGAATCAGACGGGAACTGGATGTTACAACATGCGAAGCTCAAGGCAAGGATGGAGGTTTTACAGAGAAACCAAAGGCATTTTAGGGGAGAAGAGCTTGATGGGCTGAGTTTGAAAGAACTCCAAAATTTGGAACAACAACTTGATTCTTCTCTCAAGCACATAAGGTCAAAAAAGAACCAGCTTATGCACGAATCCATTGCCGAGCTTCAGAAAAAGGATAAGGCATTGAAGGAGCAAAACAAATTGCTCACAGAGAAGGTGAAGGAGAAAGAGAAGGAGCTGGCTCAGCAGGCAAAGTTGGAGAAGCAAAATCATACAATGGACACATCCTCAGTTCCCTCACAACCATTTGAGTCGTTGAACCTTGGTGGATCTTGCCCTGCCGGAAGTAATGGGGAAGAAAACGAAGCAAACCCATCCCATTCTCAAGCCAAAGCGCTTCTTCCCTCTTGGATGCTTCACAGCCAATCTGGATGA 732 0.444 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDSCMERILERYDRYSQAEKQMIPNDHESDGNWMLQHAKLKARMEVLQRNQRHFRGEELDGLSLKELQNLEQQLDSSLKHIRSKKNQLMHESIAELQKKDKALKEQNKLLTEKVKEKEKELAQQAKLEKQNHTMDTSSVPSQPFESLNLGGSCPAGSNGEENEANPSHSQAKALLPSWMLHSQSG* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00394 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte3g00394 243 Coils Coil 122 145 - -
Pte3g00394 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte3g00394 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte3g00394 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte3g00394 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte3g00394 243 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte3g00394 243 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte3g00394 243 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Pte3g00394 243 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pte3g00394 243 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Pte3g00394 243 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Pte3g00394 243 MobiDBLite consensus disorder prediction 185 243 - -
Pte3g00394 243 Coils Coil 151 193 - -
Pte3g00394 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte3g00394 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte3g00394 243 MobiDBLite consensus disorder prediction 178 243 - -
Pte3g00394 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00394 Pte-Chr3 3254805 3258977 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte3g00394 K-box 2e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte7g00806 7 31542881 31551714 Pte3g00394 3 3254805 3258977 RCT
Pte4g00584 4 36495745 36500677 Pte3g00394 3 3254805 3258977 RCT
Pte3g00394 3 3254805 3258977 Pte3g00394 3 3254805 3258977 RCT