Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00391 ATGCTTCGCTCCCTGTCATATAAAAGCGCGCACACACACAACAAAGCTTTTTGGGAAATACATACGATGGGCGGGGGAAAATTCTTTGCTGGCGGTGGCGGTGGCGGTGGCGGAGATAGGAGGAATAGACCTCACCACCACCCGAACCAACAGGCACTCAAGTGTCCTAGGTGTGACTCCCTTCACACCAAATTCTGCTATTATAACAACTACAACCTCTCACAGCCACGCCATTTTTGCAAGAGCTGTAGACGCTACTGGACCAAAGGCGGTGTTCTTCGCAACGTGCCTGTTGGTGGTGGTTGCCGGAAATCCAACCGGTCCAAGCCTAAACACTCGATGACAGCGACAGATAATACTTCATGCGCATCTCCTCCTACGACTGCAACAGATAAGCCAGCTCTACCGCCAGCTGCGGCTCAGCAAGAAATGAAGTCAAACTCTCATTCGAGTAGCGAAAGCTCAAGCCTTACAGCGGGAAACGCTGCCTCAGCTACCACAACAGAAGCCATATCGGCGCCAACGCAAAATCCAGCTACGAATCATCTGCTCACCATCCATGAGTCAAAGTTCTTCTTCAACAGTCCAAGTGGGATCCCTGTTCTCGAAGCGGGTGTACTCGAGCAAGCAGCGGAGGCTGGTATTTTCTCGGATATTGGGAGCTTCACGAGCTTGATGACCTCGACCAGCGAAGCATTACCTTTTGAGATTGGCAATATGACTGAGGTGTCACCGTTTCGGTTCAATCAACATGGTAGTGATCATCTGGTGCAGACTGCAGCGCTGCATAACCAGGGTTTGAAGCTCCCGGAAATCACGGGTGGGTCCATGCTCGATCAGATGGTCCAAGTTGATTTATCAGATTTGCATAACAAAACTGCAAAGGCTGATGGTGGCTTTGGATCGTTGGATTGGCATGGTGTTGGAGATCAATGTCTGTTTGATCTTCCTAACAACCCAGTTGATCAAACTTACTGGACTCAGAGTCACTGGGCTGAACATGACCGTACAAGTCTATATCTTCCTTAA 1029 0.4976 MLRSLSYKSAHTHNKAFWEIHTMGGGKFFAGGGGGGGGDRRNRPHHHPNQQALKCPRCDSLHTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSNRSKPKHSMTATDNTSCASPPTTATDKPALPPAAAQQEMKSNSHSSSESSSLTAGNAASATTTEAISAPTQNPATNHLLTIHESKFFFNSPSGIPVLEAGVLEQAAEAGIFSDIGSFTSLMTSTSEALPFEIGNMTEVSPFRFNQHGSDHLVQTAALHNQGLKLPEITGGSMLDQMVQVDLSDLHNKTAKADGGFGSLDWHGVGDQCLFDLPNNPVDQTYWTQSHWAEHDRTSLYLP* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00391 342 MobiDBLite consensus disorder prediction 31 52 - -
Pte3g00391 342 MobiDBLite consensus disorder prediction 97 176 - -
Pte3g00391 342 MobiDBLite consensus disorder prediction 112 128 - -
Pte3g00391 342 MobiDBLite consensus disorder prediction 141 176 - -
Pte3g00391 342 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677|GO:0006355
Pte3g00391 342 Pfam Dof domain, zinc finger 51 107 IPR003851 GO:0003677|GO:0006355
Pte3g00391 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 41 211 IPR045174 GO:0003700|GO:0006355
Pte3g00391 342 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00391 Pte-Chr3 3233891 3236428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00391 39 343 C2C2-Dof Transcription Factor Family AT5G60850 40.836 1.80e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte3g00391 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00391 - - zju:107419070 333.569