Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00246 ATGGGTTTTTCTTCTCTGCACGATTGCATGGATTCATCAGGCTGGCTACAGAGCAACTTCCACGATGACTCTGTCTTGGATTCTTCTTCTCCATCAGGGGAAATGCTTGCGTGCTCGAGGCCGTTGATAGAGAGGAAACTCAGGCCCCCACATGACCAACCTCTCAAGTGTCCAAGGTGTGACTCAACTCATACAAAATTCTGCTATTACAACAATTACAGTCTCTCTCAGCCAAGGTACTTTTGCAAGGCCTGTAGAAGGTACTGGACTAAAGGGGGTACTCTTAGGAATATCCCCGTTGGAGGTGGTTGCAGAAAGAACAAGAAAGTCTCTGCCAAAAAATCCAATGACCAATCGGCCACTTCAAATTCAGTCCATCCTGGACCATCTTATCATCAGAATCACTCTGATCGTCAACTGTCTTTCCCAGCAGAGGTGCAGCTCTCGCATCTCAGTCATTTGCTTGGTAGCAATGCAGCACTTGGAGACTCTAATTTCATGGACGGCAAGTATAGCATTGCTATGCTTGAGAATCCAAGGCCTACTGATTTCATGGATAGTAAGTATGAGGGTATAATTGGGAATTCGAGGAATTACGATTTTATGGGAAACAATAGAGAACACTTCGGCCTGGTTGGTGGGCTTGGGGATACAAATGGTCATAATGGTTTTGCGGAAAGCTACAACACTCTCTGCTCTCCATCATTTGGAATGGATAACAATGCTGGGACGTATATGATGAACTCTTGCCAACGAATGATGCTGCCATATGATGCAAATGAGGATCAAAATGCATCAGTTGACGTGAAACCAAACCCTAGACTCTTGTCCCTGGAGTGGCAAGACCATGGTAAGGACTCGTTTGGATATTTGGACGGTCTAGGATCATGCACAGGCATGATGAGGAGTGGATATGGATCTTCAACAAATCCACTGGTCTGA 942 0.4544 MGFSSLHDCMDSSGWLQSNFHDDSVLDSSSPSGEMLACSRPLIERKLRPPHDQPLKCPRCDSTHTKFCYYNNYSLSQPRYFCKACRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDQSATSNSVHPGPSYHQNHSDRQLSFPAEVQLSHLSHLLGSNAALGDSNFMDGKYSIAMLENPRPTDFMDSKYEGIIGNSRNYDFMGNNREHFGLVGGLGDTNGHNGFAESYNTLCSPSFGMDNNAGTYMMNSCQRMMLPYDANEDQNASVDVKPNPRLLSLEWQDHGKDSFGYLDGLGSCTGMMRSGYGSSTNPLV* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00246 313 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Pte3g00246 313 MobiDBLite consensus disorder prediction 105 137 - -
Pte3g00246 313 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Pte3g00246 313 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 45 202 IPR045174 GO:0003700|GO:0006355
Pte3g00246 313 MobiDBLite consensus disorder prediction 114 137 - -
Pte3g00246 313 Pfam Dof domain, zinc finger 52 109 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00246 Pte-Chr3 2084763 2086670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00246 1 281 C2C2-Dof Transcription Factor Family AT5G62940 40.356 1.35e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte3g00246 zf-Dof 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00246 - - pop:7456845 428.328