Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02285 ATGTATGCACCGATTGATGCCAACGCTGACGGCAGTGACCCCATAATTTCATATTCTAGCCAACTATTTCTCTACAGTCCTTTTACAAGTGAAATTACCCCCAATCCTCAAGAGAATCCTGCACCTCTTTTCCCTATCTTTGACTTCCACCTCCCCTTTGAAGATCATGATGATTTGTTTTATCATGACCTTTTATTTCACCATCAACCTTTAGCTGAGCAGGCAGCTGATCAAGTTTCTATAGCCAGTGGCATTCAGATTTCAAACCGAGTGCACAGTATGGATCAACATGTAAGAGTGACTTCTACTGGTGACCATGACCACCAGAAGCAGTACCAGACCCCAAGAAAAAGAACTTCCAAGAGGGACCGTCACACAAAGATTGACACAGCTAAAGGGCCAAGGGATCGCCGAATGAGACTGTCCCTTGAAGTTGCCAGGAAGTTTTTTGGTTTGCAAGACATGTTGCGTTTTGATAAAGCTAGCAGAACAATTGAGTGGTTACTTAATCAAGCCAAATATGAAATCAAGCGGCTTGAAAGAGAAACCAACTTCCCAGTTGGTACCAATGCTGGCTGTTCACCTTCAGAAAGCGAAGTTGTATCAGGTCTGAATGAAGTTACAGCGAGTGCTAGCAATGACAAACAAGCGGAGGCTAGACCTTCAGAGAAACCTAGAAAAAGTAGGCAGTCCAGGAAGACTGTTTCCCACTCTCGCACAAAGGAGATTAGAGAGAGAGCAAGAGCAAGAGCCAGAGAGAGGACTAAGGAAAAGAATATGAGGAGCCAGGAATTTGCACAGGAGGAGGGCTCAGGGCATTGCAATGAGGCAACTAACCACAAGTTCAGTATATTTGGTGAACACGCACGTACCCAATGCCAATATAGCACCAATGGATCGTTAGATGTGAAGTCCAAAGCTCAAGAACGAAGCTTTCAAATAAAGGAGCAATCTGGGGTTTTCAATATGGACCAATGTTCAAGGACTATGAGCAAATGGAATTTACCTTTTTCCTTCGATTCCCTGCACAACCCTCAAACAACACTATTTTTTCCTTTTCCGGGCATCGATCAGTTTCCACTTCCAGCATTGCAGTTCTTGGACAAGCAATGGGAAACCTGCGACAATCACAACCTTCGCTGA 1143 0.4427 MYAPIDANADGSDPIISYSSQLFLYSPFTSEITPNPQENPAPLFPIFDFHLPFEDHDDLFYHDLLFHHQPLAEQAADQVSIASGIQISNRVHSMDQHVRVTSTGDHDHQKQYQTPRKRTSKRDRHTKIDTAKGPRDRRMRLSLEVARKFFGLQDMLRFDKASRTIEWLLNQAKYEIKRLERETNFPVGTNAGCSPSESEVVSGLNEVTASASNDKQAEARPSEKPRKSRQSRKTVSHSRTKEIRERARARARERTKEKNMRSQEFAQEEGSGHCNEATNHKFSIFGEHARTQCQYSTNGSLDVKSKAQERSFQIKEQSGVFNMDQCSRTMSKWNLPFSFDSLHNPQTTLFFPFPGIDQFPLPALQFLDKQWETCDNHNLR* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02285 380 ProSiteProfiles TCP domain profile. 121 179 IPR017887 -
Pte2g02285 380 MobiDBLite consensus disorder prediction 189 216 - -
Pte2g02285 380 Coils Coil 162 182 - -
Pte2g02285 380 MobiDBLite consensus disorder prediction 99 135 - -
Pte2g02285 380 MobiDBLite consensus disorder prediction 217 264 - -
Pte2g02285 380 MobiDBLite consensus disorder prediction 189 273 - -
Pte2g02285 380 MobiDBLite consensus disorder prediction 99 116 - -
Pte2g02285 380 Pfam TCP family transcription factor 119 261 IPR017887 -
Pte2g02285 380 ProSiteProfiles R domain profile. 241 258 IPR017888 -
Pte2g02285 380 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 83 315 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02285 Pte-Chr2 42575335 42576801 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02285 117 256 TCP Transcription Factor Family AT3G18550 42.581 5.20e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pte2g02285 TCP 7.7e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02340 1 44020145 44025685 Pte2g02285 2 42575335 42576801 RCT
Pte2g02285 2 42575335 42576801 Pte2g02285 2 42575335 42576801 RCT