Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00419 ATGTTTCAGCCCAACATCTTTGAAGCACACCACCATCATAGTATTCTTGACATGTCCCACAAAACTTCTACAGATAGTACTGAGTTTGGAAAAGTCGTTCGATCTGCAGAAGATGACTACGAGAGCAAATCCACGGAAGCTCCTTCAGGTGATGATCAAGACCCCAGTCAACGGGCCAAGAGAAAACGTTACCATCGTCACACCCAGCGCCAAATACAGGAGATGGAAGCCTTCTTCAAAGAGTGTCCTCACCCAGATGACAAGCAAAGGAAAGAGCTAAGCCGTGAGCTAGGGTTGGAACCTTTACAAGTCAAGTTCTGGTTCCAAAACAAACGCACACAGATGAAGGCTCAACATGAAAGGCATGAAAACTCTATATTGAAGGCTGAGAATGAAAAGCTTCTCGCTGAGAACACTAGGTACAAGGAAGCCCTAAGCAGTGCCACTTGCCCTAACTGTGGAGGCCCAGCTACTGTTGGTGAAATGTCATTTGATGAACAACATCTCCGGATTGAGAATGCTCGTTTAAGAGAAGAGATTGATAGGATATCAGGGATTGCGGCCAAATATGTTGGAAGGCCTACAACTTCCTACTCTCATATTCCTTCTCGTTCCCTTGATCTTATTGTTGGTAATTATGGGGGTCAGTCAGGCATGGTAGGTGAAATATATGGCGGTGCTGGAGAACTTCTAAGGTCTATCCCAGCAGGACTGACTGAAGCTGACAAACCGATGATTGTTGAGTTGGCTGTTGCAGCAATGGAAGAACTAACAAGAATGGCACAAAGTGGGGAGCCCTTATGGGTTGCAAGTGATAACTCCACTGATGTTCTGAATGAAGATGAATACTTGAGAACTTTCCCTAGAGGAATAGGTCCAAAGCCACTTGGGTTAAAGACTGAAGCTACGAGGGAGTCTGCGGTAGTTATTATGAATTACACTAATCTTGTTGAGATTCTGATGGATGTGAATCAATGGTCCACTGCCTTTTGTGGCATTGTTTCAAGAGCAATGACCATAGAAGTCTTGTCAACTGGAGTGGCTGGAAACTACAACGGGGCCTTGCAAGTGATGACAGCTGAATTCCAAGTCCCTTCACCACTTGTACCTACTAGGGAGAATTATTTTGTCAGGTACTGTAAACAACATGCTGATGGGACATGGGCTGTGGTTGATGTTTCCTTGGATAGCTTTAGAAACGGTTCGCTGTCAAGATGTCGAAGAAGGCCATCTGGTTGTTTGATTCAGGAATTACCCAATGGTTACTCCAAGGTTACATGGATTGAGCATGTAGAAGTGGATGATAGAAATCTTAACAGTTTATACAGACCTCTAGTAAGTTCTGGCTTTGCTTTCGGAGCCAAGCGATGGGTTGCTACGTTAGATAGACAATGTGAACGCCTTGCAAGTTCAATGGCAAGCAACATTCCAGCGGGAGACCTATGTGTGATTACTAATACTGATGGGAGGAAAAGTATGATGAAGCTGGCAGAGCGTATGGTATTGAGTTTTTGCAGTGGCGTCGGAGCTTCTACGGCGCATGCCTGGACGACATTATCAGCAACAGCCTCTGATGACGTGAGAGTGATGACTAGAAAGAGCATGAATGATCCAGGCAGACCGCCTGGTATTGTGTTGAGTGCTGCGACTTCATTCTGGATGCCAGTTCCTCCCAAGAGGGTTTTTGAATTCCTTCGTGATGAGAACTCTCGAAGTGAGTGGGATATCCTTTCTAATGGTGGTCTTGTTCAAGAAGTGGCACACATAGCTAATGGTCGCGATCATGGCAATTGTGTGTCCTTGCTTCGAGTAAATAGTGCAAATTCAAATCAAAGCAACATGCTGATTCTCCAAGAGAGTTGCACTGACTCTACAGGCTCTTATGTGATATATGCACCTGTTGATATCGATGCCATGAATGTGGTCTTAAGTGGCGGAGACCCGGATTACGTTGCTCTCTTGCCTTCTGGTTATGCTATACTTCCAGATGGACCTAGAATAAATGAGGCACAGGCACCCATTCTTGACGTTGGATCCGGGGGTTCACTTTTGACAGTTGCATTTCAGATATTAGTTGATTCAGTTCCCACAGCAAAACTCTCATTGGGATCAGTGGCAACTGTTAACAACTTAATCAAGTGTACAGCCGAAAGGATCAAGGCTGCAGTAATCTGTGACAGCTAG 2184 0.4505 MFQPNIFEAHHHHSILDMSHKTSTDSTEFGKVVRSAEDDYESKSTEAPSGDDQDPSQRAKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENSILKAENEKLLAENTRYKEALSSATCPNCGGPATVGEMSFDEQHLRIENARLREEIDRISGIAAKYVGRPTTSYSHIPSRSLDLIVGNYGGQSGMVGEIYGGAGELLRSIPAGLTEADKPMIVELAVAAMEELTRMAQSGEPLWVASDNSTDVLNEDEYLRTFPRGIGPKPLGLKTEATRESAVVIMNYTNLVEILMDVNQWSTAFCGIVSRAMTIEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHADGTWAVVDVSLDSFRNGSLSRCRRRPSGCLIQELPNGYSKVTWIEHVEVDDRNLNSLYRPLVSSGFAFGAKRWVATLDRQCERLASSMASNIPAGDLCVITNTDGRKSMMKLAERMVLSFCSGVGASTAHAWTTLSATASDDVRVMTRKSMNDPGRPPGIVLSAATSFWMPVPPKRVFEFLRDENSRSEWDILSNGGLVQEVAHIANGRDHGNCVSLLRVNSANSNQSNMLILQESCTDSTGSYVIYAPVDIDAMNVVLSGGDPDYVALLPSGYAILPDGPRINEAQAPILDVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIKCTAERIKAAVICDS* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00419 727 SMART START_1 248 467 IPR002913 GO:0008289
Pte2g00419 727 MobiDBLite consensus disorder prediction 34 68 - -
Pte2g00419 727 Gene3D - 47 136 - -
Pte2g00419 727 Coils Coil 112 144 - -
Pte2g00419 727 Pfam START domain 249 467 IPR002913 GO:0008289
Pte2g00419 727 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 58 723 IPR042160 -
Pte2g00419 727 CDD homeodomain 60 119 IPR001356 GO:0003677
Pte2g00419 727 SMART HOX_1 59 122 IPR001356 GO:0003677
Pte2g00419 727 SUPERFAMILY Bet v1-like 489 720 - -
Pte2g00419 727 FunFam Homeobox-leucine zipper protein GLABRA 2 248 466 - -
Pte2g00419 727 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Pte2g00419 727 Pfam Homeodomain 61 116 IPR001356 GO:0003677
Pte2g00419 727 ProSiteProfiles START domain profile. 239 470 IPR002913 GO:0008289
Pte2g00419 727 CDD START_ArGLABRA2_like 243 466 - -
Pte2g00419 727 Gene3D - 279 466 IPR023393 -
Pte2g00419 727 SUPERFAMILY Bet v1-like 240 469 - -
Pte2g00419 727 SUPERFAMILY Homeodomain-like 46 118 IPR009057 -
Pte2g00419 727 FunFam Homeobox-leucine zipper protein HDG1 49 134 - -
Pte2g00419 727 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Pte2g00419 727 MobiDBLite consensus disorder prediction 34 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00419 Pte-Chr2 3253562 3258240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00419 1 726 Homeobox Transcription Factor Family AT4G04890 77.078 0.0 1169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte2g00419 START 1.9e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00419 K09338 - qsu:112016283 1228.77