Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02346 ATGGCATCTCACTCAGAACTCACCCTGGACTGCAAACCTCGTAGTTTCTCCATGCTATTGAAATCCTTTGGAGAACAGACAGACCAGACCAACAAGCTTGAAGAGTTTCTTTCCCGCCTAGAGGGAGAACGCCTCAAAATTGACGCTTTCAAACGCGAGCTCCCTCTTTGCATGCATCTTCTTACTAATGCTATGGAGGCTTCAAGACAGCAACTACAGGCATTTAGATCAAACCAGGGTGCAAGGCCAGTACTAGAAGAATTTATGCCTATAAAGCATTCTAACTCTGAATGTCCAGAAAAGGCTTCTGATAAGGCCAATTGGATGACAACAGCTCAACTGTGGAGCCAAGCAAGTGAAGCAGCAAAACCACAACCTGTTATCCTATCACCCGAGGAACTAGATATTGGATTCAATGTCAGCTCAAACCTGGTCACAGAAGCCAAGCAGAGAAATGGTGGAGTCTTTCTTCCTTTCTCAAAAGATAGGACTTCTTGTGCCGGCTCACCTATTAGAGCTCTTCCTGAGTTGGCTCTTGCACCATCTGAACAAGATACGGAAGAGAAGAAATGTTCAGAGCCTGATCTGAATGGAATTTCGTGTCAAAAGAGGGAGACTTTTTCCAAAGGCGGTACTAGTCACTCAGATGGCCAGACAACTACCACCACCACTGCCACCTCCAACACTAGTAGCCAACCTCATAGGAAAGCGAGGAGATGTTGGTCCCCAGATCTACACAGACGATTTGTGAATGCCCTACAGATGCTCGGAGGCTCTCAAGTGGCTACTCCAAAACAGATTAGAGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATACAGACTGCACACTAGACGACCTAGTCCAAGCCCACAAGCGACCGGAGGACCTGGTCCTCAGCTGGTAGTTCTTGGAGGAATCTGGGTTCCCCCAGAGTATGCTACAGCAGCAGCTGCTGCTGCTGCGCATAATGGCACCCCTACCATCTACAGTCCGCACCCGGCATCTCACGCAGCAGTAGCGCCACCACACTACTGTGCTGCTGCCACTCCTGTACCTCAGGAGTTCTACACAGCTGCATCTCAACAACCTCCGCTGCCGCCACCGGCCCATCACCTTCCACTCCATCATCAAGTCCAAATGTTTAACAAAGCCACGACTCAGATGCACAACTCACCAGAATCTGACATCAAAGGAGGCGGTGACAGGTCCGAGAGCATTGAAGATGGCAAATCGGACAGTAGTAGCTGGAAAAATGAGAGTGGTGAGAACGAAGGAGGAAGAAAGGGATTGGCATCCCTGAGAGAAGAAGGGGAGGAGAGCAATGGCAGTGAGATCACACTCAAATTCTAA 1377 0.488 MASHSELTLDCKPRSFSMLLKSFGEQTDQTNKLEEFLSRLEGERLKIDAFKRELPLCMHLLTNAMEASRQQLQAFRSNQGARPVLEEFMPIKHSNSECPEKASDKANWMTTAQLWSQASEAAKPQPVILSPEELDIGFNVSSNLVTEAKQRNGGVFLPFSKDRTSCAGSPIRALPELALAPSEQDTEEKKCSEPDLNGISCQKRETFSKGGTSHSDGQTTTTTTATSNTSSQPHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQATGGPGPQLVVLGGIWVPPEYATAAAAAAAHNGTPTIYSPHPASHAAVAPPHYCAAATPVPQEFYTAASQQPPLPPPAHHLPLHHQVQMFNKATTQMHNSPESDIKGGGDRSESIEDGKSDSSSWKNESGENEGGRKGLASLREEGEESNGSEITLKF* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02346 458 MobiDBLite consensus disorder prediction 177 242 - -
Pte1g02346 458 Pfam Myb-like DNA-binding domain 238 289 IPR001005 -
Pte1g02346 458 NCBIfam myb-like DNA-binding domain, SHAQKYF class 236 291 IPR006447 GO:0003677
Pte1g02346 458 Gene3D - 235 293 - -
Pte1g02346 458 Coils Coil 33 53 - -
Pte1g02346 458 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 426 IPR044787 GO:0003700|GO:0006355
Pte1g02346 458 MobiDBLite consensus disorder prediction 397 458 - -
Pte1g02346 458 FunFam Myb family transcription factor 235 293 - -
Pte1g02346 458 SUPERFAMILY Homeodomain-like 234 294 IPR009057 -
Pte1g02346 458 MobiDBLite consensus disorder prediction 404 452 - -
Pte1g02346 458 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 235 293 IPR017930 -
Pte1g02346 458 MobiDBLite consensus disorder prediction 199 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02346 Pte-Chr1 44316479 44318896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02346 1 459 G2-like Transcription Factor Family AT2G03500 51.860 3.47e-136 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pte1g02346 Myb_DNA-binding 9.9e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02346 1 44316479 44318896 Pte1g02346 1 44316479 44318896 RCT