Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02340 ATGACCATAGATATGTATGCATCAGTAGAAGCCCATGCTGATGGCAATGACCCCATCTCATACTCGGGCCAACTATTTCTCTACAGGCCTTTTGCAAACGAGACCACCCCCAATGAAAACCCTTCACCTGCTTTATCCATATCTGACTTCCCCTTCCGCTTTGAAGATCATGATGATTTTATTTTCACTGACGTTTTGTTTGAGCACCAGCCTTTAGCTGATCAGGAAGCTGAAGATCATAAGGTTTCTGATCAGATCCAGGTTTCGGAAAAAAATTGGGAAACGGATCAACATGTGACAGAAAATCCTCCTAACCATGATAACCAGCAGCAGCAGAAGAAGAAGATAGAGACACCAAGAAAAAGACCATCCAAGAGAGATCGCCATACCAAGATCAAAACAGCTCAAGGGCTAAGAGATCGCAGAGTAAGATTGTCTCTTGAAGTTGCGGGGAGTTTCTTTCGTTTGCAAGATATGTTGCGATTTGACAAAGCAAGCAAAACAATTGACTGGTTACTGAATCAAGCCAAAGATGAGATCAATGCGCGGCTTGAAATAGAGAAGTCAGAGAACAATGTCCTGATAAGTAGCAGTGCTGGTGTTCAAAGTATGTCTTCGACTTCAGAATGTGAAGTACCTGGACTGGATGAAGTCACGGGCAGTGCTACAAATGACAAACAAGATGAGGCTAAACCTTCGGTAAAAGAAAGAAGAATCAAACTGTCTCGGAAGATTCTTCTCAAACCTCGTCCAAAGGAGGTCAGAGCGAAAGCAAGAGAAAGAGCTAGAGAAAGGACAAAGGAAAAGATTATGAGGAGCAAGAAACTTGTAGTGGAGGAATCAAGGCATAGTACCGAGGCAACAAATTATAGAACCCACATAGTTGGTGAAGATTCACACACCACATGCCAAAGCAACACGAATCGCTCGTTGGATGAGGTGACCAAAGATCAAGGACGAAGCCTTCAAGCAAAGGATCATTCTGGGGCCTCATATGAGCAATCCTTGCTGACAGTGAGCAAATCGGACTCGCCCTTTCTTTTCAGTTCCCTTCACAACTCGGCCACAATACAAGACCATCAGTTTGCAGTGCTGCAGTACTTGAATAAGCCATGGGAGGCCTACAGCTTTCACACCCTACACTGA 1146 0.4415 MTIDMYASVEAHADGNDPISYSGQLFLYRPFANETTPNENPSPALSISDFPFRFEDHDDFIFTDVLFEHQPLADQEAEDHKVSDQIQVSEKNWETDQHVTENPPNHDNQQQQKKKIETPRKRPSKRDRHTKIKTAQGLRDRRVRLSLEVAGSFFRLQDMLRFDKASKTIDWLLNQAKDEINARLEIEKSENNVLISSSAGVQSMSSTSECEVPGLDEVTGSATNDKQDEAKPSVKERRIKLSRKILLKPRPKEVRAKARERARERTKEKIMRSKKLVVEESRHSTEATNYRTHIVGEDSHTTCQSNTNRSLDEVTKDQGRSLQAKDHSGASYEQSLLTVSKSDSPFLFSSLHNSATIQDHQFAVLQYLNKPWEAYSFHTLH* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02340 381 MobiDBLite consensus disorder prediction 299 330 - -
Pte1g02340 381 MobiDBLite consensus disorder prediction 92 136 - -
Pte1g02340 381 MobiDBLite consensus disorder prediction 252 272 - -
Pte1g02340 381 ProSiteProfiles TCP domain profile. 125 183 IPR017887 -
Pte1g02340 381 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 90 329 IPR005333 GO:0003700
Pte1g02340 381 Pfam TCP family transcription factor 124 271 IPR017887 -
Pte1g02340 381 ProSiteProfiles R domain profile. 252 269 IPR017888 -
Pte1g02340 381 MobiDBLite consensus disorder prediction 199 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02340 Pte-Chr1 44020145 44025685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02340 121 367 TCP Transcription Factor Family AT3G18550 37.282 1.20e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pte1g02340 TCP 3.9e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02340 1 44020145 44025685 Pte1g02340 1 44020145 44025685 RCT
Pte1g02340 1 44020145 44025685 Pte2g02285 2 42575335 42576801 RCT