Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00839 ATGGCCCGTGGAAAGATTCAGCTGAAGCGTATTGAGAACCCTGTGCACAGGCAAATCACCTTCTGCAAGCGCCGATCAGGGCTTCTGAAGAAGGCCAAGGAGCTCTCCATACTTTGTGATGCAGAAATTGGAGTTTTCGTTTTTTCTGCTCATGGAAAGCTCTATGAGCTGGCCACCAACGGGACCATGCAAGGGCTTATTGAGAGGTACTTGAGGTACACAGGAGGTCAGCCTGAGCCAACCAATGTAACACTTCAACCGGATCCAAAAGAGGAAGTGAAAATGCTAAAACAGGAGATTGAGACACTGCAAAAAGGTCTAAGGTATATGTTTGGAGAGGGAATTGGAACTATGAACATTGAGGAGTTACAAGCACTCGAAAAACAACTTGAAGAGTGGATTTATCATATTCGATCAATGAAGATGAACTTTATGCTAAGGGAAATTCAAACTTTGAGGGATAAGGAGGAAATGCTTCAAGCAGCGAACCAGTGTCTCCAAGACAAGATTGTGAACGCTGGAATGACTAACATTGGTGCCGCTAACATGTTCCCACTAACCATAGAAGATGACATATTTCAGTTCTAG 588 0.4405 MARGKIQLKRIENPVHRQITFCKRRSGLLKKAKELSILCDAEIGVFVFSAHGKLYELATNGTMQGLIERYLRYTGGQPEPTNVTLQPDPKEEVKMLKQEIETLQKGLRYMFGEGIGTMNIEELQALEKQLEEWIYHIRSMKMNFMLREIQTLRDKEEMLQAANQCLQDKIVNAGMTNIGAANMFPLTIEDDIFQF* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00839 195 Pfam K-box region 89 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte1g00839 195 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte1g00839 195 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte1g00839 195 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte1g00839 195 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Pte1g00839 195 Coils Coil 142 169 - -
Pte1g00839 195 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte1g00839 195 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte1g00839 195 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 144 - -
Pte1g00839 195 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Pte1g00839 195 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Pte1g00839 195 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pte1g00839 195 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00839 Pte-Chr1 15340610 15349053 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte1g00839 K-box 6.9e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte7g00806 7 31542881 31551714 Pte1g00839 1 15340610 15349053 RCT
Pte4g00584 4 36495745 36500677 Pte1g00839 1 15340610 15349053 RCT
Pte1g00839 1 15340610 15349053 Pte1g00839 1 15340610 15349053 RCT