Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00159 ATGGTTTTCTCCTCCACTCCTGCTTATCTTGATCCAGCTGCCAACTGGCAAGAGCTATGGAATCATCCAACTGGTAGTAGTAGTGGAACTACTTCTCATCTTCTTTCATCGCCACCGCCACCTCCTCCTCCTCCTCAACCGCAACCATCACTGCAGCACAATGGAGATGATAGTTCAGGCTCGATTCTACCTGGGTCTATGGCTGATAGAGCTCGAATGGCTAACGTACCTATGCCTGACGCTGCCCTAAAATGCCCAAGATGTGAATCTACAAACACCAAATTTTGTTACTTCAACAATTACAGCCTCTCTCAGCCTCGCCACCTCTGCAAGACCTGTAGAAGGTATTGGACTAGAGGAGGGGCCCTGAGAAACGTTCCAGTCGGAGGCGACTACCGGCGAAACAAGCGAAGCAAAGCAAGTAGCTCTAAGTCACCGGTTAGCTCAGATCGACAAACTGGCAGCATTGCTAGTTCAGCAAACTCGATTTCTTCGAATAGTGGCAGCAGTGCTGAGATTCTTGGCCTTACACCATCTCAATTTGCACCACTGAGATTTATGGCTCCACGAAGTCATCGGACAACTGACTTTCCAGCTAGAGACATGGGCTTAAGTTATGGCCTAAGCTACAATCCAGTATCTGCTCCAATAGGAGGAATTAGTGATTTGAATTTTCACATAGAAAGTGCTTTGAGTGGAAACGGTAGCAGTATTGGAGGTATCACTAGCTCTTTCCTATCTGCCTCTGGTTTGGAACAATGGAAACTGCAGCAAACACTGCAGTATCCTCTCGTGGCTGGTTTGGAAACATCACCTGCAGGACTATACTCCTTTGAAAGTGGGGCTGAAGGATATGCAGGTATAGTAAGTCATGTAAGGCCAAAACCAACTAGTACTGCAGAGTTTATATCTCAAATGGCCTCAGTTAAAATGGAGGAAAGTCGTCAGCAAATCAATTTTTCAAGGCAACTGTTAGGGCTGAACAATCAAGGAACGGATCGATATTGGAATGGTAGCACAAACACAACATGGACGGATCTTACGGCTAATTTTAGCTCTTCCTCTAATACCACTAGCAATCCCCTGTAA 1089 0.461 MVFSSTPAYLDPAANWQELWNHPTGSSSGTTSHLLSSPPPPPPPPQPQPSLQHNGDDSSGSILPGSMADRARMANVPMPDAALKCPRCESTNTKFCYFNNYSLSQPRHLCKTCRRYWTRGGALRNVPVGGDYRRNKRSKASSSKSPVSSDRQTGSIASSANSISSNSGSSAEILGLTPSQFAPLRFMAPRSHRTTDFPARDMGLSYGLSYNPVSAPIGGISDLNFHIESALSGNGSSIGGITSSFLSASGLEQWKLQQTLQYPLVAGLETSPAGLYSFESGAEGYAGIVSHVRPKPTSTAEFISQMASVKMEESRQQINFSRQLLGLNNQGTDRYWNGSTNTTWTDLTANFSSSSNTTSNPL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00159 362 MobiDBLite consensus disorder prediction 35 50 - -
Pte1g00159 362 MobiDBLite consensus disorder prediction 141 168 - -
Pte1g00159 362 ProSitePatterns Zinc finger Dof-type signature. 85 121 IPR003851 GO:0003677|GO:0006355
Pte1g00159 362 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 70 247 IPR045174 GO:0003700|GO:0006355
Pte1g00159 362 MobiDBLite consensus disorder prediction 20 65 - -
Pte1g00159 362 ProSiteProfiles Zinc finger Dof-type profile. 83 137 IPR003851 GO:0003677|GO:0006355
Pte1g00159 362 Pfam Dof domain, zinc finger 81 137 IPR003851 GO:0003677|GO:0006355
Pte1g00159 362 MobiDBLite consensus disorder prediction 20 34 - -
Pte1g00159 362 MobiDBLite consensus disorder prediction 124 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00159 Pte-Chr1 1638231 1639834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00159 1 326 C2C2-Dof Transcription Factor Family AT5G02460 36.458 2.60e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte1g00159 zf-Dof 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00159 - - pvy:116110527 331.257