Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01305 ATGGTGGCACAGGTGAGACCTGAGCTGAAGAAAACACAGGGAAAAGACGTTGAAGGCGGCGTAAAAAGCGAGCCTACAAGGACTTTTTATACTAACTCTACATTGCACTCCTTGTGGCTTTGGAGTGTCTATATGGGTTTGGGTGCTCAGTTCAAAACTTTGCAGCTGACTTCTTTTAAGCTTTTTGGTAGAAAGATCCTTTTGCCTCAATGTCAGACACAGACCACTCGGATTCCTGTTAAGTTTGAACTCATGGATACTTGTAATAGAACAAATATGGAAGGAAATCAAGCGCTTGACTCTGGGGAACTGGAAAAGTCCTCTTGTGTGGCTGATGCTGAGGACAAAAGCCAAAATCTCGTCAACTTGGATAAGCAACAAGCAGATTCTAAGTCTGAGGAAGATAGCACCCAGAATAGTACAACAACAGATGAAGAGAAAGTTTTTAAGAAACCAGATAAGATTCTTCAGTGTCCCAGATGCAATAGTTTAGACACAAAGTTTTGTTATTTCAATAACTACAATGTCAATCAGCCTAGGCACTTCTGCAAAAATTGCCAAAGGTATTGGACAGCCGGCGGGACAATGAGAAATGTACCTATAGGTGCGGGTCGGAGAAGGAACAGGCATTTAGCCTCTCAATTCCGCCAGATAATAGTATCGGCTGATTCAGATAATCAGCCAGCTATATCAGGTCTCGAACATTCAGCTTTCACGTCTTCATCAGGCAATGGTACTGTATTAAGGTTTGGTCCCGATGTCCCTCCTCTTTGTGAATCCATGGAGACTATGCTTAATCTCAAAGACCGAAAGAGATGCATCGACGTGGGTTCTGTCGATCATGCAGAATCAAGGGAGGAGATGTGTGGATCTTCCTTGACCACTGTTGGCACTCAAGGAACTGAATTTCCAGTTCGTGTCATGCAGGGGGAGCAAGTTGTTCTAAATGAGATAAACACATCACGTTCTGTGCATTGTTATCCTGTTTCTCCTTGGGTGCTTCCCTGGAATCCATGTTGGAATAGCTCTACCTCCAAGGCTGCAGCGCACCGTCCATCTGAGGGTGAAGGTAACCCGAGGAGCAGCAGTCCTAGTTCGCTCCCGTGGTATCCCATGCCGGCGGTGGCAGTTCCAGGCATCTGCCCGCCAAACATGTCATTACAATTTTTGCCAGCATCATGTTGGGGTGGCATGCCACTTTGGCCTGCCGGAACAGGAACTATCTCTACCGGATCTAATTTCTGCCTTTCACCAACTTCCTCCACAAGTAACCGATGCCACTCCGGCAATGGTTCGCCAACACTTGGGAAACATTCCAGGGACACAAATTTCGCAGAAGAGAAATCAGATAAATGTATTTTGGTCCCAAAGACTCTGAGAATGGGTGACCCCATAGAAGCTTCCAAGAGTCCTATATGGGCTACGTATGGCATTAATCCTTAA 1443 0.4567 MVAQVRPELKKTQGKDVEGGVKSEPTRTFYTNSTLHSLWLWSVYMGLGAQFKTLQLTSFKLFGRKILLPQCQTQTTRIPVKFELMDTCNRTNMEGNQALDSGELEKSSCVADAEDKSQNLVNLDKQQADSKSEEDSTQNSTTTDEEKVFKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRRNRHLASQFRQIIVSADSDNQPAISGLEHSAFTSSSGNGTVLRFGPDVPPLCESMETMLNLKDRKRCIDVGSVDHAESREEMCGSSLTTVGTQGTEFPVRVMQGEQVVLNEINTSRSVHCYPVSPWVLPWNPCWNSSTSKAAAHRPSEGEGNPRSSSPSSLPWYPMPAVAVPGICPPNMSLQFLPASCWGGMPLWPAGTGTISTGSNFCLSPTSSTSNRCHSGNGSPTLGKHSRDTNFAEEKSDKCILVPKTLRMGDPIEASKSPIWATYGINP* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01305 480 MobiDBLite consensus disorder prediction 1 21 - -
Pte18g01305 480 ProSitePatterns Zinc finger Dof-type signature. 158 194 IPR003851 GO:0003677|GO:0006355
Pte18g01305 480 PANTHER CYCLIC DOF FACTOR 2 58 479 IPR045174 GO:0003700|GO:0006355
Pte18g01305 480 MobiDBLite consensus disorder prediction 345 366 - -
Pte18g01305 480 ProSiteProfiles Zinc finger Dof-type profile. 156 210 IPR003851 GO:0003677|GO:0006355
Pte18g01305 480 MobiDBLite consensus disorder prediction 120 148 - -
Pte18g01305 480 MobiDBLite consensus disorder prediction 127 148 - -
Pte18g01305 480 Pfam Dof domain, zinc finger 153 210 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01305 Pte-Chr18 25046954 25049783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01305 58 478 C2C2-Dof Transcription Factor Family AT5G39660 32.773 5.83e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte18g01305 zf-Dof 2.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01305 - - qsa:O6P43_009926 488.419