Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00839 ATGGCGACTGAAGGGGTTGATGAACATCCGTCTCTGCCTTCTTACACTGAGATGATAATGAAGGCAATTGCAGCGTTAAATGAGGAGAATGGTTCAAACAAATCGTCTATCGCAAAGTATATTGAGGATACATATAGTGAATTGCCTGCTGACCATTTAGGACTACTTACTCACCACCTCAACATGATGAAGGACAGTGGGGAATTAGTGTTCTGGAAAAACAACTTCTCCAAACCTGACCCTAATGCACCACCCAGAAGAGGACGCGGTAGACCACCTAAACCGAAGGAACCAATGTCAGAATGCACTATTGTTTCCTCACCGTCAAGGCCAAGGGGTCGTCCACCTAAGGACCCCAACGCACCACCAAAGCCTCCAAAGGGATCATCAGGTAGGAAACCAAGAGGTCGACCAAGGAAGATGGCGAAGCCCACAGGTAGTTTGGTTGCAGCTACAAGTCCAGCTGCATCAAGTGGGAGACCCAGAGGTAGGCCTCCAAAGGTCAAGCCTCAACAATTGCCAGAAGTGAGTGTTCGATAA 540 0.4815 MATEGVDEHPSLPSYTEMIMKAIAALNEENGSNKSSIAKYIEDTYSELPADHLGLLTHHLNMMKDSGELVFWKNNFSKPDPNAPPRRGRGRPPKPKEPMSECTIVSSPSRPRGRPPKDPNAPPKPPKGSSGRKPRGRPRKMAKPTGSLVAATSPAASSGRPRGRPPKVKPQQLPEVSVR* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00839 179 MobiDBLite consensus disorder prediction 72 179 - -
Pte18g00839 179 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Pte18g00839 179 PRINTS AT-hook-like domain signature 157 167 IPR017956 GO:0003677
Pte18g00839 179 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Pte18g00839 179 SMART AT_hook_2 159 171 IPR017956 GO:0003677
Pte18g00839 179 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Pte18g00839 179 SMART AT_hook_2 132 144 IPR017956 GO:0003677
Pte18g00839 179 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Pte18g00839 179 Pfam linker histone H1 and H5 family 13 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte18g00839 179 SUPERFAMILY "Winged helix" DNA-binding domain 9 86 IPR036390 -
Pte18g00839 179 Gene3D - 7 84 IPR036388 -
Pte18g00839 179 Pfam AT hook motif 159 170 IPR017956 GO:0003677
Pte18g00839 179 Pfam AT hook motif 110 120 IPR017956 GO:0003677
Pte18g00839 179 Pfam AT hook motif 133 143 IPR017956 GO:0003677
Pte18g00839 179 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Pte18g00839 179 PRINTS High mobility group protein (HMGY) signature 107 118 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Pte18g00839 179 PRINTS High mobility group protein (HMGY) signature 121 140 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Pte18g00839 179 PANTHER HISTONE H1 11 171 - -
Pte18g00839 179 MobiDBLite consensus disorder prediction 112 129 - -
Pte18g00839 179 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte18g00839 179 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte18g00839 179 FunFam HMG-Y-related protein A 7 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00839 Pte-Chr18 20788157 20789708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00839 18 80 Single Myb Histone (SMH) Gene Family AT1G49950 41.270 1.16e-06 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g00839 18 20788157 20789708 Pte18g00839 18 20788157 20789708 RCT