Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00328 ATGGCCATCGTGCATAATGATCAAGATGTGCAGGGGATTAAGCTCTTTGGTACGACAATATCATTACAAGGTCAAGAGTCTACAGACGATATTAACAAAAGTGATAAAGATCGAGCAGCTGTTCATAAGAGACCAGAAAAGATCATACCATGTCCAAGATGCAAGAGTGCTGAGACCAAATTTTGTTACTTCAACAATTACAACGTCAACCAGCCAAGGCACTTCTGCAAGGGCTGCCAGAGGTATTGGACTGCTGGTGGGGCTCTAAGGAATGTTCCGATCAGGGCTGGCCGGAGAAAAGCCAAGCGGCCTAATTGCCGTGGGCTTATAGGTGGGTCTTCAGACAACTGTGTTTATGATGGATCTGGGGTTCATCAGCAATTTGGTTTGGAACCGGAGTTGGTGGAGGAGTGGCAACTCACAGAAAGTCAAGGCGGTTTCCGGCATCTTTATCCGGTGAAAAGGCGAAGGGATGTCTGA 480 0.4708 MAIVHNDQDVQGIKLFGTTISLQGQESTDDINKSDKDRAAVHKRPEKIIPCPRCKSAETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIRAGRRKAKRPNCRGLIGGSSDNCVYDGSGVHQQFGLEPELVEEWQLTESQGGFRHLYPVKRRRDV* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00328 159 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Pte18g00328 159 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Pte18g00328 159 Pfam Dof domain, zinc finger 47 103 IPR003851 GO:0003677|GO:0006355
Pte18g00328 159 PANTHER CYCLIC DOF FACTOR 2 32 129 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00328 Pte-Chr18 7366393 7366930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00328 8 157 C2C2-Dof Transcription Factor Family AT1G29160 55.030 1.77e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte18g00328 zf-Dof 2.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00328 - - qsa:O6P43_012767 211.075