Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00238 ATGGGTTTGAGTTCTAGGCAGGTTTCAAGTGATAGGCTTGATTGGAACAAGGACTTGTCGCAGGCTCATCAAAATCTGAAGCTGCCAAAACGTCCTTCCATGAAGCGACAACATCAGCAACAAAATCATCAAATATCTGAGCCTTTGAAGTGTCCAAGATGTGATTCCACAAACACGAAGTTCTGTTACTTTAACAACTACAATGAGTCTCAGCCTCGTCACTACTGCAAAGCTTGTAAGAGGCATTGGACCAAAGGTGGGACACTGAGAAATGTTCCTGTAGGTGGTGGACGCAAGAACAAGAGAATCAAGAGAACCGCTGCTTCACCATCTGTTACCTCTGCAGCTATTGATCCACACGAGGCTAGTCATGCTTCACAGCAGAGACAGAGTCTTCTTCATTTGGAACCTGTTGGTCGGAAAAACCTGGCTGGAGTACTCTATCAACCAACGAATCATCAAACGCCTTTGATGCCACAACATGATCATTTGATAGACACTTGTGAATTTGGTAGTAAGTTTTTTGTGGGCACGAAGGGTAGTGTGCTGATGGGGCTGCCTCAGCCGCAAAGCCAATGCCTGCAAGTTCCCTTCTCAAGCTCAAGCTGTTTCGATACAAACTTGTCATCAATTGCTACATCTTTTCAACCTTCCAATGTCTATGATCATGGTGATGAGTTGATCAGAAGTATTGAAGGGTCGACCATGAATGGCATCATGTCCAGCACAAGTGGTACTTACACACAGCCATGGCAAGCTCCTATGCTAGGTAGTGGTATGGAAATGTCAAATACTTGGAATTGGGAGGACATTGATTCGTTGGTGTCAACTGATCTAAACGTACCTTGGGAAGACACTGACATAAAACCCTGA 873 0.4467 MGLSSRQVSSDRLDWNKDLSQAHQNLKLPKRPSMKRQHQQQNHQISEPLKCPRCDSTNTKFCYFNNYNESQPRHYCKACKRHWTKGGTLRNVPVGGGRKNKRIKRTAASPSVTSAAIDPHEASHASQQRQSLLHLEPVGRKNLAGVLYQPTNHQTPLMPQHDHLIDTCEFGSKFFVGTKGSVLMGLPQPQSQCLQVPFSSSSCFDTNLSSIATSFQPSNVYDHGDELIRSIEGSTMNGIMSSTSGTYTQPWQAPMLGSGMEMSNTWNWEDIDSLVSTDLNVPWEDTDIKP* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00238 290 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Pte18g00238 290 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Pte18g00238 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 209 IPR045174 GO:0003700|GO:0006355
Pte18g00238 290 Pfam Dof domain, zinc finger 48 101 IPR003851 GO:0003677|GO:0006355
Pte18g00238 290 MobiDBLite consensus disorder prediction 90 128 - -
Pte18g00238 290 MobiDBLite consensus disorder prediction 25 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00238 Pte-Chr18 3715170 3717042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00238 47 144 C2C2-Dof Transcription Factor Family AT1G51700 49.558 1.20e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte18g00238 zf-Dof 5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00238 - - gmx:778119 286.189