Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00686 ATGAGTTCTTCGGCTCTTCAAGTTTGCATGGATTCATCAGATTGGCTGCAGGGCACTATTCACGACGAGTCTGGCATGGATTCTTCTTCGCCATCAGGGGAAATGCTTACATGCTCGAGGCCCTTGATAGAGAGGAGGCTAAGGCCCCCACATGATCAAGCCCCCAAGTGTCCTAGGTGTGACTCAACATACACGAAGTTCTGCTATTACAATAATTACAGTCTATCTCAACCCAGGTATTTCTGCAAAACCTGTAGAAGGTATTGGACGAAAGGAGGCACGCTGAGGAACATTCCCGTTGGTGGTGGATGCAGAAAGAACAAAAAAGTCTCTGCCAAAAAATCCAACGATCAATCTATTTCTTCAAATTCAAATCCACAACATCTGGGACAATCCTCTCATCACAATAACACAGATCTTCAACTTTCTTTCCCAGCAGAGATGCAGCTTTCACATCTAAGTCATTTGCTTGGTACCCATGCTGTACTTGGGGAACCAAATTTTATGGACAGCAAGTATAGGTATAGCGCTGCTATGCTTGAGAATCCGAGGCCTGTTGATCTTAAGCCGGAAGACATTATAGCGAATTCTAGGACTTACGATTTAATGGGAAACAACAGAGAACTCTTAGGCATGATTGGTGAGGTTGGAGATGTGAATGATCATAATGGGTTAGCGCAAAGCTTCCATGGCTTTTGCTCTCCACCATTTGGAATGCCCATCGATGGGAATCATAGTGGGACCTATGTTATGGACTCTTGCCAGCGACTAATGCTGCCATATGCTACAAACGAGGACTCGGGTGCAGCATTAATGGACGTGAAACCAAACCCGAAGCTCTTGTCCCTCGATTGGCAGGACCCGAGTCGCTCTGATGATCATGCTGGTAAAGAATCATTTGGTTATGTTCATGGTGTAGGATCATGGACAGGCATGATGGGTGGATATGGATCTTCTTCACCAAACCCATTGGTGTAA 978 0.454 MSSSALQVCMDSSDWLQGTIHDESGMDSSSPSGEMLTCSRPLIERRLRPPHDQAPKCPRCDSTYTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDQSISSNSNPQHLGQSSHHNNTDLQLSFPAEMQLSHLSHLLGTHAVLGEPNFMDSKYRYSAAMLENPRPVDLKPEDIIANSRTYDLMGNNRELLGMIGEVGDVNDHNGLAQSFHGFCSPPFGMPIDGNHSGTYVMDSCQRLMLPYATNEDSGAALMDVKPNPKLLSLDWQDPSRSDDHAGKESFGYVHGVGSWTGMMGGYGSSSPNPLV* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00686 325 Pfam Dof domain, zinc finger 53 109 IPR003851 GO:0003677|GO:0006355
Pte17g00686 325 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Pte17g00686 325 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 44 153 IPR045174 GO:0003700|GO:0006355
Pte17g00686 325 MobiDBLite consensus disorder prediction 105 138 - -
Pte17g00686 325 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Pte17g00686 325 MobiDBLite consensus disorder prediction 114 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00686 Pte-Chr17 18391340 18393536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00686 1 326 C2C2-Dof Transcription Factor Family AT5G62940 40.769 7.20e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte17g00686 zf-Dof 4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00686 - - jre:108991451 455.292