Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00260 ATGGCTGCGGTTACTGAGATTCCCGGTGATGCAGCGGCTGCCGAGAATTTGGACACCACGTCCAAACCCGAATCCGAATTCAATGTGCAGAAGCTGGTTGATATGTTCACGAAGCTGAACCCTTTTGCTAAGGAGTTCGTCCCATTGGCATACACTCACCATGATCATCAATCTCATCACAACAATTTTCCTGTTGCTGTTAAGCCTATTGCTAATGATAACTACATACATCACCGAAGGAGGAGAAATAGTTATAATCAGGGGAGAAGGTTGAATGGACGGGCACTCAGAGCTCAAAGAGAAGATAGCATTAGAAGAACAGTGTATGTTTCAGATATTGATCAGCATGTCACTGAAGAGCGACTTGCTGCCTTATTTAGCATCTGTGGGCAGGTTGTTGACTGTCGAATTTGTGGCGATCCTCATTCAATCCTTCGTTTTGCATTCGTGGAGTTTGCGGATGTCTTAGGTGCAAGAACAGCTTTGAACCTTGGTGGCACAGTGCTTGGTTATTATCCAGTCAGAGTCCTTCCTTCAAAAACTGCTATCCTTCCTGTTAATCCAACATTTCTTCCCAGATCAGATGATGAGAGGGAAATGTGTAGCAGGACTGTCTATTGTACGAATATTGACAAAAAGGTTTCTCAAGCAGATTTGAAGAGCTTTTTTGAGGCAGCTTGTGGTGAGGTTACTCGCTTGAGGCTTTTAGGGGACCTTGTGCATTCAACTAGAATTGCTTTTGTGGAGTTTGCGATGGCAGAAAGTGCAATCCTCGCTCTCAGTTGTAGTGGCATGGTCTTGGACACCCAACCAATACGGTCTGGTTTCTATGATATAGAAATTCTTTTTTTTGAATCCTCTACTTGGGTTCTTGCTTATTCATGTTCCATATCTCGCTAA 900 0.4367 MAAVTEIPGDAAAAENLDTTSKPESEFNVQKLVDMFTKLNPFAKEFVPLAYTHHDHQSHHNNFPVAVKPIANDNYIHHRRRRNSYNQGRRLNGRALRAQREDSIRRTVYVSDIDQHVTEERLAALFSICGQVVDCRICGDPHSILRFAFVEFADVLGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQADLKSFFEAACGEVTRLRLLGDLVHSTRIAFVEFAMAESAILALSCSGMVLDTQPIRSGFYDIEILFFESSTWVLAYSCSISR* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00260 299 CDD RRM2_CID8_like 199 274 IPR034825 -
Pte17g00260 299 FunFam Polyadenylate-binding protein-interacting protein 11 72 183 - -
Pte17g00260 299 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 35 273 - -
Pte17g00260 299 MobiDBLite consensus disorder prediction 1 22 - -
Pte17g00260 299 CDD RRM1_CID8_like 104 183 IPR034823 -
Pte17g00260 299 FunFam Polyadenylate-binding protein-interacting protein 10 197 275 - -
Pte17g00260 299 SMART rrm1_1 107 177 IPR000504 GO:0003723
Pte17g00260 299 SMART rrm1_1 204 275 IPR000504 GO:0003723
Pte17g00260 299 SUPERFAMILY RNA-binding domain, RBD 83 182 IPR035979 GO:0003676
Pte17g00260 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 181 IPR000504 GO:0003723
Pte17g00260 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 272 IPR000504 GO:0003723
Pte17g00260 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 170 IPR000504 GO:0003723
Pte17g00260 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 286 IPR000504 GO:0003723
Pte17g00260 299 Gene3D - 70 182 IPR012677 -
Pte17g00260 299 Gene3D - 196 274 IPR012677 -
Pte17g00260 299 SUPERFAMILY RNA-binding domain, RBD 193 273 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00260 Pte-Chr17 3453872 3457624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00260 90 275 Eukaryotic Initiation Factors Gene Family AT1G34140 27.411 4.42e-14 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00260 17 3453872 3457624 Pte17g00260 17 3453872 3457624 RCT