Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00234 ATGGCGAAACCCAGTCGTCCTCGTCGTTCACCATCGGGTTCAAAATCGGATTCTTCTTCTCGGTCTAGATCATACTCGCGTTCCGTCTCTCACTCAACCTCTCGTTCCCGCTCATTATCTCGGTCTCCCTCCCCATCGCACTCTAGGTCTCCTTCACGCTCCGTTTCTTCTTCTCCTTCCCGTAGTATCAGTTCAAGGAGCCGAAGCCCGCCTCCCCAGAGAAAGAAGAGCCCTGTTGGCATCACAAGACGTGGCCGTTCTCCACCACCTGCAACTAAAAGGACTTCCCCACCCCCAAGGAAGACATCTCCTGTTCGTGAATCGCTTGTCCTTTATGTAGACAAACTCAGCAGGAATGTCAACGAAGGCCATCTGAGAGAAATATTCAGTGCCTATGGTGAGGTGGTAAATGTGGAGCTGGCCATGGATCATAGAGTCAATCTCCCAAGAGGAAATGCATACGTGGAGTTCAAGAATAGAGCAGCTGCTGAGAAGGCTTTATTGTACATGGATGGTGCACAAATAGATGGGATTGTTATACACGCTAGGTTCACTTTACCTCCAAGGCAGAAGGTCTCACCACAACGTAAAGAAACTGTTGTTGCTTCAAAGAAGGATGTCTCCAGGTCTGATAATGCAGACGTCGATAAAGATGGACCCAAGCGGCAAAGAGAGCCTTCTCCAAGGAGGAAGCCTCCGCCCTCACCTAGGAGGAGATCTCCTGGACCTCGAAGAAATGTATCTCCAAGACGCCCCCTGGATTCTCCACGTCGACGTGCAGGTTCTCCTGTCCGTCGAAGGTCTCCATATCGTCGTGGGGAGACACCTCCTCGAAGAAGGCCCATATCCCCGGCTCGACGACGTTCCCCATCACCAGCAAGGCGTGTTAGATCGCCATTGAGAGGCTCACCACGAAGGATGCGTGCTGGAAGTCCCAGTCGCAGGCGTTCACCCCCTTTTTCAAGGCGCCGGTCACCACCAAGAGGAGCTCGGAGTCCTCCTAGAAGATCTCCTATTGGTCGTAGACGCTCACCAATTCGCAGGTCTGCACGATCGCGCTCAAGATCCTTTTCTCCAAGAAGAGGGCGGCCACCAGCAAAGCGGGGAAGATCTTCATCCTCTTCTGATTCACCAAGTCCTCGCAAGGCGATCAGGAGATCAAGTCTGAGCCCAAGGAGGCCATTGATAGGGCGTCGCAGTAGCAGCAAAAGCAGTAGCAGCAGTTCTCCACCTCCTCCTCGAAAGCCATAG 1251 0.53 MAKPSRPRRSPSGSKSDSSSRSRSYSRSVSHSTSRSRSLSRSPSPSHSRSPSRSVSSSPSRSISSRSRSPPPQRKKSPVGITRRGRSPPPATKRTSPPPRKTSPVRESLVLYVDKLSRNVNEGHLREIFSAYGEVVNVELAMDHRVNLPRGNAYVEFKNRAAAEKALLYMDGAQIDGIVIHARFTLPPRQKVSPQRKETVVASKKDVSRSDNADVDKDGPKRQREPSPRRKPPPSPRRRSPGPRRNVSPRRPLDSPRRRAGSPVRRRSPYRRGETPPRRRPISPARRRSPSPARRVRSPLRGSPRRMRAGSPSRRRSPPFSRRRSPPRGARSPPRRSPIGRRRSPIRRSARSRSRSFSPRRGRPPAKRGRSSSSSDSPSPRKAIRRSSLSPRRPLIGRRSSSKSSSSSSPPPPRKP* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00234 416 MobiDBLite consensus disorder prediction 1 106 - -
Pte17g00234 416 MobiDBLite consensus disorder prediction 250 281 - -
Pte17g00234 416 Gene3D - 2 198 IPR012677 -
Pte17g00234 416 MobiDBLite consensus disorder prediction 9 72 - -
Pte17g00234 416 SUPERFAMILY RNA-binding domain, RBD 100 193 IPR035979 GO:0003676
Pte17g00234 416 MobiDBLite consensus disorder prediction 368 384 - -
Pte17g00234 416 MobiDBLite consensus disorder prediction 198 232 - -
Pte17g00234 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 180 IPR000504 GO:0003723
Pte17g00234 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Pte17g00234 416 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 5 269 - -
Pte17g00234 416 MobiDBLite consensus disorder prediction 335 367 - -
Pte17g00234 416 MobiDBLite consensus disorder prediction 282 322 - -
Pte17g00234 416 FunFam Serine/arginine-rich splicing factor SR45 3 194 - -
Pte17g00234 416 SMART rrm1_1 110 183 IPR000504 GO:0003723
Pte17g00234 416 MobiDBLite consensus disorder prediction 189 416 - -
Pte17g00234 416 CDD RRM_RNPS1 111 183 IPR034201 -
Pte17g00234 416 MobiDBLite consensus disorder prediction 394 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00234 Pte-Chr17 2855179 2859644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00234 111 180 Eukaryotic Initiation Factors Gene Family AT3G16380 38.889 1.90e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00234 17 2855179 2859644 Pte17g00234 17 2855179 2859644 RCT