Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00900 ATGGATCCTTTAAATGCACAACATAAGGAAATGACCAGTCACTCACTGGAAAACATGTTGGTTTGGTCAAAAGCTCAACAAGCCAGAAAGCCTAGGCCTCAGCCTGAGCAATCTCTCAAATGCCCTAGGTGTGATTCCGCCAACACTAAATTCTGCTACTACAACAATTACAGCCTTTCTCAGCCAAGATACTTCTGCAAGTCTTGCAGAAGGTATTGGACGAAAGGAGGAACACTGAGGAATGTTCCAGGAGGTGGAGGCTGTAGGAAGAACAAGAGGTCATCATCTGCATCATCATCCAAGAGTACCCAAGATATTCAACCACTCACACCAAGTTCCGATTCACTACCTGGTCTCCCTGCATCGTCTTATGAATATAGTGATCTCACAATTGCACTAACTAGGCTCCGAAAGCAGACATGTGAGCAGTTGGGTTATGACGATCATCAACGTGATCTCTCTTTTCAGGGAAAACCTTCCCAATCTGATATTCTTGGCAACAATAGCATGGCTACATCTGCTTACACAAACACTGTTTTCATTGATGCACTCCGGAGCGGGGTCCTCGAAACCCAGAATAATAATCTTTACTATGGATTTGGAGAAGATGACTATGGTAATGGTGTGGGTATCCGGGGTAGTGAAGAAATGATGCTACCTAATTATGATCAGGAAACAAGTAATGTTACAACTCAAGCAGTTACAGTCACCACAGTGAAGCACGAGTTATGCAATGGAAGAGAACAAAGTGACAACAGGATCTCATGGGGTTTTCCAGGGCTGTTCAATGGTGAAGGAAATATCGATAAGCTTGATCCAGGAAGAGAGACTTGGAATAACTTCACTTCTTCTTGGCATGGACTTCTCAGTACCCCTAATGTAGACAGTGCAACTCCCTCAACACAAAATGGAAGAAAGAAACTAAACTTCAGTGTTTGTTAG 942 0.4331 MDPLNAQHKEMTSHSLENMLVWSKAQQARKPRPQPEQSLKCPRCDSANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPGGGGCRKNKRSSSASSSKSTQDIQPLTPSSDSLPGLPASSYEYSDLTIALTRLRKQTCEQLGYDDHQRDLSFQGKPSQSDILGNNSMATSAYTNTVFIDALRSGVLETQNNNLYYGFGEDDYGNGVGIRGSEEMMLPNYDQETSNVTTQAVTVTTVKHELCNGREQSDNRISWGFPGLFNGEGNIDKLDPGRETWNNFTSSWHGLLSTPNVDSATPSTQNGRKKLNFSVC* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00900 313 MobiDBLite consensus disorder prediction 83 120 - -
Pte16g00900 313 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Pte16g00900 313 MobiDBLite consensus disorder prediction 292 313 - -
Pte16g00900 313 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 187 IPR045174 GO:0003700|GO:0006355
Pte16g00900 313 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Pte16g00900 313 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Pte16g00900 313 MobiDBLite consensus disorder prediction 91 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00900 Pte-Chr16 28216121 28217999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00900 37 294 C2C2-Dof Transcription Factor Family AT2G28510 41.852 3.23e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte16g00900 zf-Dof 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00900 - - gmx:100799737 358.992