Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00533 ATGTTAGCCAATAGTAATACTGGTCCTGCTTCTTCTGTTGCTCCATCTTCTTCCTCTGATGCGCTTGTCTCTTCAGAAAATGGCAATTCTCACAAAAGAAAACGAAGACCTGCAGGAACCCCAGATCCAAATGCAGAAGTGGTCTCTCTCTCACCAAAGACCTTGATGGAATCTGACCGTTACATATGTGAGATCTGCAACCAAGGTTTCCAGAGAGATCAGAACCTACAGATGCATAGGAGAAGGCACAAAGTACCATGGAAGCTACTGAAAAGGGAGGCTCAAGAAGTGCAAAAAAAGGTGTTTGTGTGTCCAGAGCCAACATGTCTGCACCATGATCCTTCACATGCTCTCGGTGACCTTGTTGGGATTAAGAAACATTTTAGAAGGAAGCATAGCAATAACAAACAATGGGTCTGTGAGAAATGCTCTAAAGGTTATGCAGTTCAATCTGATTACAAAGCTCACCTCAAAACCTGTGGTAGTAGAGGGCATTCTTGTGACTGTGGCCGTGTCTTTTCCAGGGTAGAAAGCTTCATTGAACATCAAGATGCTTGCAATGGTAGGCAAGTTCATCCGCAGGTACAACCAGACCATGCTGCATGTTCTTCTCAGACTACTTCAAGTACTGGCCCTTCTAGTGATGCTAACATATGTACAGCTGCATTGCAAGCCATGTCAACGCCAAAAAACCATGAGCCTGCCACCTCACAGAGAAAACATGATGAGCCTTCATCATCTCCTGTACCATGCAGTTTGGAGCTTCAGCTGCATCCTTCATCCAAAGAAGAATCCAAACGAAATAATTCTGATGAGAAGTATGAAACTCATGATGATCTCAAGCTTTCAATAGGTTCAACTAGTAATAGTGATAAGAATGACTTAAAGGAGCACAGTTCAGATGCTCATGGAAGTGAACCAACATTGGAAGTGGCAAGGTTGAGAGAGTTTGCTAGTAAGGAACTGAAGTTGGCAATGGCAGAAAAGGCCTATGCAGAAGAGGCAAGAAAAGAAGCAAAACGTCAGACTGAGATTGCTGAAGTTGAGTTTTCAAATGCTAAGAGGATAAGAAAACAAGCACAGGATGAGCTTCAGAAAGCTCAGACTTTGAAAGAGAAATCTGTAAAGAAGATCACTTCTAAATTGATGCAGATCACTTGCCAAGCTTGCAAGCAATTGTTTCAGTCATTTTCAGTGCCTGCAGCACCACCTGATGACACTTCCCTTGCCATGAGTTACATGTCTTCAGGCACAACGGAAGCGGAAGGTGAATGA 1275 0.4329 MLANSNTGPASSVAPSSSSDALVSSENGNSHKRKRRPAGTPDPNAEVVSLSPKTLMESDRYICEICNQGFQRDQNLQMHRRRHKVPWKLLKREAQEVQKKVFVCPEPTCLHHDPSHALGDLVGIKKHFRRKHSNNKQWVCEKCSKGYAVQSDYKAHLKTCGSRGHSCDCGRVFSRVESFIEHQDACNGRQVHPQVQPDHAACSSQTTSSTGPSSDANICTAALQAMSTPKNHEPATSQRKHDEPSSSPVPCSLELQLHPSSKEESKRNNSDEKYETHDDLKLSIGSTSNSDKNDLKEHSSDAHGSEPTLEVARLREFASKELKLAMAEKAYAEEARKEAKRQTEIAEVEFSNAKRIRKQAQDELQKAQTLKEKSVKKITSKLMQITCQACKQLFQSFSVPAAPPDDTSLAMSYMSSGTTEAEGE* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00533 424 MobiDBLite consensus disorder prediction 409 424 - -
Pte14g00533 424 Coils Coil 350 377 - -
Pte14g00533 424 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Pte14g00533 424 Coils Coil 322 342 - -
Pte14g00533 424 MobiDBLite consensus disorder prediction 291 308 - -
Pte14g00533 424 Gene3D Classic Zinc Finger 38 105 - -
Pte14g00533 424 SMART c2h2final6 61 83 IPR013087 -
Pte14g00533 424 SMART c2h2final6 138 165 IPR013087 -
Pte14g00533 424 SMART c2h2final6 102 132 IPR013087 -
Pte14g00533 424 MobiDBLite consensus disorder prediction 197 216 - -
Pte14g00533 424 FunFam protein indeterminate-domain 12-like 40 108 - -
Pte14g00533 424 SUPERFAMILY beta-beta-alpha zinc fingers 58 84 IPR036236 -
Pte14g00533 424 MobiDBLite consensus disorder prediction 1 51 - -
Pte14g00533 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Pte14g00533 424 MobiDBLite consensus disorder prediction 1 26 - -
Pte14g00533 424 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 378 IPR031140 -
Pte14g00533 424 MobiDBLite consensus disorder prediction 405 424 - -
Pte14g00533 424 Gene3D Classic Zinc Finger 123 203 - -
Pte14g00533 424 MobiDBLite consensus disorder prediction 259 280 - -
Pte14g00533 424 MobiDBLite consensus disorder prediction 226 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00533 Pte-Chr14 25255438 25258501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00533 1 424 C2H2 Transcription Factor Family AT2G01940 56.659 2.89e-156 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte14g00533 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00533 14 25255438 25258501 Pte14g00533 14 25255438 25258501 RCT