Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00412 ATGGCCGGCGTAGTGGCCGGCGACAGAGACCGTATGACGGAGCTCTTGGGACTTGTGGAGGAGATTATGGGGGCCATTGGTGGTGGTGGGTCAGTCTCAAAATCCGCCATTGTTGCTGGTAATGCGTTGTTCAGGAAGGACTGTTCTGATCTAGTACGTCGGATCTCTTTGCTAAGCCATTTGTTTGAGGAGATTAGAGACATGAAAATCGTGGGTAAAGGGGCATTTTGTGCTTCTTCAAGTTCTTCTGTAACAGGGTTGGACTCATCCGATTGGTCTTTTGATCTGGAGTTGGCACTCCAAGCTGCTAAGCGTATTTTGCTGCAAGCTGTGAACTTCCATTGTGATTCTTTATCTAATGGAGCTGCCAAGAAACTTGTTTCACAATTTCATTGTGTGACATGGAAGTTGGAGAAGGCATTGAACACATTACCATATGACCATTGGGACATCTCAGTTGAAGTTAGAGAGCAGGTGGACTTGGTGAGAAAGCAATTAAGACGTGCTGCAAGCAGATACAGATCTATGACTTCAAAAACATCTGTTGACCAATCCCAGCCACTTGTTCCTGAAGGTAATCAGACATTAAGTGGTTCAATGAATCGAGTAGAGAGACAGAGCAGCAGCACAATGAATTCACTGGCTAGAGTAACGAGTGATTCCTTCTTGCAAAGCAATATGTTGAAAAGTTGCAGTACAGATAATCTGTTCTGTTTGAGCAGAAGCACCTCTGAACTTTCCTTGTCAATTGACATGGATTCTGACAAGCAAGAGAATTCCTATAGTAACACGACAAATGAAAAAGAGGCAAAGAAACCTGATGCAACAGTAATCCCTGAAGATTTCAAGTGCCCTATATCCTTAGAACTAATGAGGGATCCTGTGACAGTGGCTACTGGTCAGACATACGAGAGATCTTACATACAAAGATGGATAGATTGTGGAAATGAAACCTGCCCAAAAACGCAGCTGAAGCTCCCAAATACGAACCTCACCCCCAATAATGTTCTGAGGAGTCTAATTTCTCAGTGGTGTGTGAAGCATAACATTGAGCAGCCAACAGGATTAACAAATGGGAAAATAAAGAAAAGTGATGGATCATTTCGTGATGTTAGTTCTGATATAGCAGCCATTCAAAGTCTGGTCAGGAAACTCTCTAGCAGGTCAATTGAGGAGCGTAGAGGAGCTGTAACAGAAATCCGGTCACTATCAAAGCGGTGTACAGATAATAGGATACTGATTGCAGAAGCAGGGGGCATCCCAGTTCTTGTCAATCTACTAACTTCAGATGATATTGTAACGCAGGAAAATGCTGTGACCTCTATTCTTAATCTCTCTATATATGACAATAACAAAGGACTTATAATGCTTGCTGATGCAATTCCTTCCATTGTCCAAGTATTAAGATCTGGAAGCATGGGAGCCAGGGAAAATGCAGCAGCAACCCTTTTTAGCTTGTCCCTTGCAGATGAAAACAAGATCATAATTGGCGCATCTGGAGCAATCCCTGCATTGGTGGAGTTGCTCCAAATTGGTAGCCCTAGGGGAAAGAAAGATGCAGCAACAGCCTTATTTAATCTGTGCATTTATCATGGGAATAAGGGTAGGGCTATTAGGGCGGGAATTGTCAAAGCTCTGATGAAGATGCTCACAGATTCAGGCAACTCCATGGTTGACGAGGCTCTTACAATTATGTCTGTTCTTGCCTGTCACCGTGAAGCAAAAGTTGCCATTGTAAAAGCTAGTGCAATTCCTGTGCTGATAGATCTTCTGAGGACAGGACTTCCTCGCAACAAAGAGAATGCAGCCGGTATACTACTGTCTCTGTGTAAGAGAGATAACGAGAATGTTGCTTGTATAAGTCGGCTAGGTGCTGTAATACCTCTGACAGAGCTTGCAAAGAGTGGCACTGAGAGGGCGAAACGAAAAGCTAACTCGTTGCTGCAGCATCTTCAGCAGCTGCAGCAGCTTGCAAATGTTACTTGTACTTGA 1992 0.4372 MAGVVAGDRDRMTELLGLVEEIMGAIGGGGSVSKSAIVAGNALFRKDCSDLVRRISLLSHLFEEIRDMKIVGKGAFCASSSSSVTGLDSSDWSFDLELALQAAKRILLQAVNFHCDSLSNGAAKKLVSQFHCVTWKLEKALNTLPYDHWDISVEVREQVDLVRKQLRRAASRYRSMTSKTSVDQSQPLVPEGNQTLSGSMNRVERQSSSTMNSLARVTSDSFLQSNMLKSCSTDNLFCLSRSTSELSLSIDMDSDKQENSYSNTTNEKEAKKPDATVIPEDFKCPISLELMRDPVTVATGQTYERSYIQRWIDCGNETCPKTQLKLPNTNLTPNNVLRSLISQWCVKHNIEQPTGLTNGKIKKSDGSFRDVSSDIAAIQSLVRKLSSRSIEERRGAVTEIRSLSKRCTDNRILIAEAGGIPVLVNLLTSDDIVTQENAVTSILNLSIYDNNKGLIMLADAIPSIVQVLRSGSMGARENAAATLFSLSLADENKIIIGASGAIPALVELLQIGSPRGKKDAATALFNLCIYHGNKGRAIRAGIVKALMKMLTDSGNSMVDEALTIMSVLACHREAKVAIVKASAIPVLIDLLRTGLPRNKENAAGILLSLCKRDNENVACISRLGAVIPLTELAKSGTERAKRKANSLLQHLQQLQQLANVTCT* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00412 663 FunFam RING-type E3 ubiquitin transferase 455 555 - -
Pte14g00412 663 FunFam RING-type E3 ubiquitin transferase 278 350 - -
Pte14g00412 663 MobiDBLite consensus disorder prediction 250 264 - -
Pte14g00412 663 MobiDBLite consensus disorder prediction 175 199 - -
Pte14g00412 663 SUPERFAMILY RING/U-box 276 352 - -
Pte14g00412 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 583 IPR000225 GO:0005515
Pte14g00412 663 Coils Coil 637 657 - -
Pte14g00412 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515
Pte14g00412 663 Gene3D - 454 555 IPR011989 -
Pte14g00412 663 SUPERFAMILY ARM repeat 377 651 IPR016024 -
Pte14g00412 663 FunFam RING-type E3 ubiquitin transferase 557 656 - -
Pte14g00412 663 SMART arm_5 448 488 IPR000225 GO:0005515
Pte14g00412 663 SMART arm_5 407 447 IPR000225 GO:0005515
Pte14g00412 663 SMART arm_5 489 529 IPR000225 GO:0005515
Pte14g00412 663 SMART arm_5 571 611 IPR000225 GO:0005515
Pte14g00412 663 SMART arm_5 530 570 IPR000225 GO:0005515
Pte14g00412 663 CDD RING-Ubox_PUB 279 331 IPR045210 -
Pte14g00412 663 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Pte14g00412 663 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Pte14g00412 663 Pfam Armadillo/beta-catenin-like repeat 408 446 IPR000225 GO:0005515
Pte14g00412 663 Pfam Armadillo/beta-catenin-like repeat 573 610 IPR000225 GO:0005515
Pte14g00412 663 Pfam Armadillo/beta-catenin-like repeat 490 528 IPR000225 GO:0005515
Pte14g00412 663 Gene3D - 556 659 IPR011989 -
Pte14g00412 663 Gene3D - 361 453 IPR011989 -
Pte14g00412 663 Pfam U-box domain 278 349 IPR003613 GO:0004842|GO:0016567
Pte14g00412 663 MobiDBLite consensus disorder prediction 250 273 - -
Pte14g00412 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 351 IPR013083 -
Pte14g00412 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 501 IPR000225 GO:0005515
Pte14g00412 663 FunFam RING-type E3 ubiquitin transferase 361 454 - -
Pte14g00412 663 PANTHER U BOX DOMAIN-CONTAINING 45 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00412 Pte-Chr14 21915619 21918884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00412 42 656 U-box Gene Family AT1G23030 59.643 0.0 676
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00412 14 21915619 21918884 Pte14g00412 14 21915619 21918884 RCT