Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01843 ATGGCGAATTTTCCATCTTCCTTAACAACACTAGTAGTTCTGGTAGGGGTTTTCTTGACATGGACATCAATGGCTAAAGTCAAAGTGGAGGCTCAAGCACCATTCAAGTGCAGTACGAACGGTTCAATCTCATGCCGTTCTTTCGTCGACTACGTCGCTCCAAACGCCACCCATCTCCGCGAAATCCAGATTCTCTTCCAAGTCAAGAATCTCCGGAACATCCTCGGAGTGAATGGCCTACCAGCCTCAACCGCACCAGACACACCAGTGTCCGCAAAGCAGATTGTCCGAATCCCCTTCAAATGCAAGTGCGATTCCAAGAGCAACGGCACCGGCCTCTCCGACGGGCGGCCAAAGTACAAGATCCAAAGTGGGGACACTCTGTACCACATAGCTGCGGAGGTGTTCTCGAATCTCGTGACATTCCAACAGATTCAAGCCGTGAACGGAATCAAGAACGCCGACTTGATTCAGATTGGACAGGAGCTGTGGATTCCTCTGCCGTGTAGCTGTGACCAGGTGAACGGCGCACAAGTTTTGCATTACGGACACGTGGTGCAGCCTGGGAGCTCGGTGGAGCAGATGGCAGAGAAGTATGGTACCCCAGCGGACACCATTTTGAGTCTGAATGGAATAAAGAATGCCAGTAGCCTCCTTGCAGGCCAGGTGCTTGATATTCCTCTCAGAGTTTGCTCCTCAAATGTGAGAAATGACTCACTGGACTTTCCCTTGCTTGTTGCAAATGGTACCTATGTCTACACTGCCAATAATTGTGTGAGATGCAAATGTGACGCCGCAAATAACTGGACATTACAATGTGAGCCATCCCAACTCAAACCCTCGTCCAACTGGTCAACTTGCCCACCTATGCAATGTGAGGGTTCAGGCAGCAACTTGTTACTCGGCAACACGACATCTTCTGATTCATGCAACAGCACCACATGTGGCTACGCGGGGTATAATTCCCGAAATATCCTCACGTTTCTCACGGCAAACTCCACTTGCCCAGCTTCTGGAGAACCAAGCACCGCTACCTCCACCTTGCGACAGTCTGGTTGGACTTGCCTTCTAATTGTGATGCATATGATTCTGTTCTATGCTAATCTTCATTAA 1113 0.4978 MANFPSSLTTLVVLVGVFLTWTSMAKVKVEAQAPFKCSTNGSISCRSFVDYVAPNATHLREIQILFQVKNLRNILGVNGLPASTAPDTPVSAKQIVRIPFKCKCDSKSNGTGLSDGRPKYKIQSGDTLYHIAAEVFSNLVTFQQIQAVNGIKNADLIQIGQELWIPLPCSCDQVNGAQVLHYGHVVQPGSSVEQMAEKYGTPADTILSLNGIKNASSLLAGQVLDIPLRVCSSNVRNDSLDFPLLVANGTYVYTANNCVRCKCDAANNWTLQCEPSQLKPSSNWSTCPPMQCEGSGSNLLLGNTTSSDSCNSTTCGYAGYNSRNILTFLTANSTCPASGEPSTATSTLRQSGWTCLLIVMHMILFYANLH* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01843 370 ProSiteProfiles LysM domain profile. 118 165 IPR018392 -
Pte13g01843 370 SMART LysM_2 183 227 IPR018392 -
Pte13g01843 370 SMART LysM_2 119 166 IPR018392 -
Pte13g01843 370 CDD LysM 184 226 IPR018392 -
Pte13g01843 370 ProSiteProfiles LysM domain profile. 182 226 IPR018392 -
Pte13g01843 370 SUPERFAMILY LysM domain 183 227 IPR036779 -
Pte13g01843 370 CDD LysM 120 165 IPR018392 -
Pte13g01843 370 Gene3D LysM domain 117 176 IPR036779 -
Pte13g01843 370 Gene3D LysM domain 182 237 IPR036779 -
Pte13g01843 370 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 9 339 - -
Pte13g01843 370 Pfam LysM domain 184 227 IPR018392 -
Pte13g01843 370 Pfam LysM domain 120 166 IPR018392 -
Pte13g01843 370 SUPERFAMILY LysM domain 119 167 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01843 Pte-Chr13 31126425 31128459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01843 9 351 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 47.110 1.16e-101 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01843 - - qsa:O6P43_011394 415.616