Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01180 ATGAGCAGAGCAGAGGGTATGGATGAAGCTAAAGATTTGGGCATTAAGCTTTTTGGTAGAAAGATCCCTTTGCCTGAATGTCAGATTCAGACTTCGATTCCTGTCAAGTATGAGCTCACGGATAATTGTAATAGAACAGCCGCGGAAGGCAATCCTGCACGGGACTCTGATAAACAAGAAAAGTCCTCTTGTTCAGCTGATGGTGAGAACAAAAGCCAAAATCTCGTCAAGCTGGATGAGCCACGGCCATGTTCTAAATCTGAGGAAGATAGCACACAGAGTGGCACAACAGATGAAGAGAAAGTCTTTAAGAAACCTGATAAGATTCTTCAATGTCCAAGATGCAACAGTTTAGAAACGAAGTTTTGTTACTTCAATAACTACAATGTCAATCAGCCTAGGCACTTCTGCAAAAATTGCCAAAGGTATTGGACAGCCGGTGGAACCATGAGAAATGTACCTATAGGTGCCGGTAGGCGAAAGAACAAGCATCTAGCCTCACAATTCCGCCAGATAATAGTATCTTCTGATGGAATTCCAACGACGAGATTAGAAACCATAGATTCAAATAATCACTCTGTTATATCAGGTCTTCAACATTCAGCTTTCACATCATCAGCAGCAGATGGTACCGTATTAAAGTTTGGTCCTGAACCGCCTGCTCTATGTGAATCCATGGAGACTATGCTTAATCTCAAAGACCAGAAGAGATGCATCGATTTAGGTTCTGTCAATTGTGCAGAATCCAGTGAGGAGCCATCAATATGTGGCTCTTCCTTGACCACTGCTGGCACTCAAGGAACTGAACTGCCCATTCGTGTCATGCAGGGGGAGCAAGTTGTTCCAAATGAGCTAATTACTTCACGCTCTCTGCAATGCTATCCAATTCCTCCTTTGATCCTTCCCTTGAATCCATGTTGGGATAGCTCTACCTCCATGGCTGCAGCACGCCATCCATATGGGGGTGAAGGTGACCCAAACAGCAATCCTAATTCAGTTAGGTGGTATCCAATGCCGGTGGTGGCAGTTCCAGGTATCTGCGCACCAAACATACCATTACAATTTTTACCAGCATCATGTTGGAGTAGCATGCCAGTGTGGCCTGCTGGAACAGGAGCCATCTCTCCTGGATCTAATTTCTGCCTTTCACCAACTTCCTCCACAAGTAACAGCTGCAGCTCTGCCAATGGTTCACCAACCCTTGGAAAACATTGCAGGGACACAAATTTCATGGAAGACAAATCAGAAAAATGTGTTTTGGTCCCAAAAACTCTGAGAATCGATGACCCCAGTGAAGCTTCCAGGAGTCCTATATGGGCTACATTAGGCATTAAGCCTAACTGA 1344 0.4464 MSRAEGMDEAKDLGIKLFGRKIPLPECQIQTSIPVKYELTDNCNRTAAEGNPARDSDKQEKSSCSADGENKSQNLVKLDEPRPCSKSEEDSTQSGTTDEEKVFKKPDKILQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQFRQIIVSSDGIPTTRLETIDSNNHSVISGLQHSAFTSSAADGTVLKFGPEPPALCESMETMLNLKDQKRCIDLGSVNCAESSEEPSICGSSLTTAGTQGTELPIRVMQGEQVVPNELITSRSLQCYPIPPLILPLNPCWDSSTSMAAARHPYGGEGDPNSNPNSVRWYPMPVVAVPGICAPNIPLQFLPASCWSSMPVWPAGTGAISPGSNFCLSPTSSTSNSCSSANGSPTLGKHCRDTNFMEDKSEKCVLVPKTLRIDDPSEASRSPIWATLGIKPN* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01180 447 MobiDBLite consensus disorder prediction 51 65 - -
Pte13g01180 447 ProSiteProfiles Zinc finger Dof-type profile. 110 164 IPR003851 GO:0003677|GO:0006355
Pte13g01180 447 MobiDBLite consensus disorder prediction 45 102 - -
Pte13g01180 447 MobiDBLite consensus disorder prediction 73 102 - -
Pte13g01180 447 PANTHER CYCLIC DOF FACTOR 2 10 446 IPR045174 GO:0003700|GO:0006355
Pte13g01180 447 ProSitePatterns Zinc finger Dof-type signature. 112 148 IPR003851 GO:0003677|GO:0006355
Pte13g01180 447 Pfam Dof domain, zinc finger 107 164 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01180 Pte-Chr13 12795313 12798042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01180 12 445 C2C2-Dof Transcription Factor Family AT5G39660 35.163 7.04e-61 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte13g01180 zf-Dof 3.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01180 - - qsa:O6P43_009926 498.819