Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00814 ATGTTATCCAATAGTCCTACTGCTCCTACCTCTTCTGTTGCTCCATCTTCTTCCTCTGATGCCCTCATCTCTTCGGAAAATGGCAATTCTCTCAAAAGAAAACGCAGACCTGCAGGAACCCCAGATCCGGATGCAGAAGTGGTATCTCTCTCTCCAAGGACCTTGATGGAATCCGACCGTTACATATGTGAGATCTGTAATCAAGGTTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGAAGGCATAGGGTACCATGGAAGCTGCTTAAAAGGGAGGCGCAGGCTGAAGTGAGGAAGAAGGTGTTTGTGTGTCCCGAGCCAACATGTCTACACCATGATCCATCCCATGCTCTTGGTGATCTTGTTGGAATCAAGAAGCATTTTAGAAGAAAGCACAGCAACAACAAACAGTGGGTTTGTGAGAAATGCTCCAAAGGTTATGCAGTTCAATCTGATTACAAAGCTCACCTCAAAACCTGTGGTACCAGAGGGCATTCTTGTGACTGTGGCCGTGTCTTTTCCAGGGTAGAAAGCTTCATTGAACATCAAGATGCTTGCAACTCTAGGCGATTTCATCCACAGGTAAAAGCACACCAGGCTGCATGTTCTTCTCAAACTGCTTCAAGTACCAGTCCTTCAAGTGATGCTAACATCGGTACAGCTGCATTGCATGCCATGTCAATGCCAAAAAAACATGAGCCTGCCACCACATTGAGCTCACAGAGAAAACATGATGAGCCTTCATCATCTCGTGAACCGTGCAGATTAGAGCTTCAGCTACTTCCTTCAACCAAAGGAGAATCCAAACGAAATAATTCTGATGAGAAGTGTGAAACTCATGATGATCTCAAGCTTTCAATAGGCTCAACTAGTAATAGTGATAAGAATCATGACTTAAAGGAGCTTAACTCAGATGCCCATGAAAGTGAACCCACACTGGAAATGGCAAGGTTGAGAGAGTTTGCTAGTAAGGAGCTGAAGTTGGCAATGGTAGAAAAGGCCTACGCAGAAGAGGCAAGAAGAGAAGCAAAACGTCAGATGGAGATAGCTGAAGTTGAGTTTTCAAGTGCTAAGAGGATAAGGAAACAAGCACAGGATGAGCTTCAGAAAGCTCAGACTTTGAAAGAGGAATCCATCAAGAAGATCAGTTCTACATTGATGCAAATCACTTGCCAAGCTTGCAAGCAATTGTTTCAGTCATCATCTTCAGTGCCTGCAGCACCATCTGATGATACTTCCCTTGCCATGAGTTACATGTCTTCAGCCACAACAGAAGGGGAAGGTGAATAA 1293 0.4462 MLSNSPTAPTSSVAPSSSSDALISSENGNSLKRKRRPAGTPDPDAEVVSLSPRTLMESDRYICEICNQGFQRDQNLQMHRRRHRVPWKLLKREAQAEVRKKVFVCPEPTCLHHDPSHALGDLVGIKKHFRRKHSNNKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNSRRFHPQVKAHQAACSSQTASSTSPSSDANIGTAALHAMSMPKKHEPATTLSSQRKHDEPSSSREPCRLELQLLPSTKGESKRNNSDEKCETHDDLKLSIGSTSNSDKNHDLKELNSDAHESEPTLEMARLREFASKELKLAMVEKAYAEEARREAKRQMEIAEVEFSSAKRIRKQAQDELQKAQTLKEESIKKISSTLMQITCQACKQLFQSSSSVPAAPSDDTSLAMSYMSSATTEGEGE* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00814 430 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Pte12g00814 430 Gene3D Classic Zinc Finger 38 106 - -
Pte12g00814 430 MobiDBLite consensus disorder prediction 295 312 - -
Pte12g00814 430 MobiDBLite consensus disorder prediction 228 312 - -
Pte12g00814 430 MobiDBLite consensus disorder prediction 237 253 - -
Pte12g00814 430 MobiDBLite consensus disorder prediction 401 430 - -
Pte12g00814 430 SUPERFAMILY beta-beta-alpha zinc fingers 60 159 IPR036236 -
Pte12g00814 430 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 393 IPR031140 -
Pte12g00814 430 MobiDBLite consensus disorder prediction 1 51 - -
Pte12g00814 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Pte12g00814 430 SMART c2h2final6 139 166 IPR013087 -
Pte12g00814 430 SMART c2h2final6 61 83 IPR013087 -
Pte12g00814 430 SMART c2h2final6 103 133 IPR013087 -
Pte12g00814 430 MobiDBLite consensus disorder prediction 269 284 - -
Pte12g00814 430 MobiDBLite consensus disorder prediction 1 28 - -
Pte12g00814 430 FunFam protein indeterminate-domain 12-like 40 109 - -
Pte12g00814 430 Coils Coil 334 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00814 Pte-Chr12 9386712 9389419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00814 23 430 C2H2 Transcription Factor Family AT2G01940 56.909 1.39e-159 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte12g00814 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00814 12 9386712 9389419 Pte12g00814 12 9386712 9389419 RCT