Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00946 ATGCTGGAAATCAAAGACCCTGCCATCAAGCTGTTTGGAACGAAGATCACTTTGCCGGCTGATTGTGAGGTTCAGCCAATCTCATACGACAATTCGGCTTCAACCGTGGCTAATATGGACATCCAAGAAGAACGAGAGAAACAGAGAGATATAGATATAGCTGACAAGGATTCAACTTCAGGAAAAGCAGCTGAAGCTCCTTCAGAACATGAGGATGATCTGCCTGAGAACTCAGATGACACTTCCAATTCGGAACCATTGGCAGAGGGTACTTCTGATCCTAAAAATGTTGAAGAAGATGCAAAAGAAAAATCGTCTAAGATAAAGAAGGAGCAGAATGATTCAAGCAACTCCCAAGAGAAACCCCTCAAGAAGCCTGATAAATTACTCCCTTGTCCTAGATGCAATAGCATGGATACAAAATTCTGTTACTATAATAACTACAATGTCAATCAGCGGCGACATTTCTGCAAGGCGTGTCAAAGGTATTGGACTGCAGGAGGTACTATGAGGAATGTACCAGTGGGAGCTGGAAGAAGGAAGAACAAGAACTCAGCCTTACACTATCGTCACATCACCATTTCGGAGGCTGTTGAAGCAGCTAGGATTGATGCCATGGATGGAACACATTTGCCAACATTGAACGCCAATGGTAGAGTCTTGAGCTTTGGCTTAGATGCACCTATTTGTGATTCCATGGCTTTTGTCCTGAATCTTACAGATAAGAAGGTTATCAATGGTTGCAGAAATGGATATCATACCTTTGAAGAACAAAGAGTTCCAGTTCCTTGCAGAGGCAAAGAAAATCGCAATGGTTGTTCTAATGCTTCTTCTGTCACAGTTTCAACTTCAACTTCAACGGACGGTACTGCAAAAAAACACTCAAGAGAGTCATCATTTTCAGCCATTAGCGGCTTGCCTGCTCAGATTCCATGCCTTCCTGGTGTTCCATGGTCTTATCCTTGGAATTCTGCAGCTCCCCCACCTGGTTTATATCCTCCAGGATTACCTCTTCCATTTTATCCAGCTCCTTTATGGAACTGTGGTGTCCCTAGCAACTGGAACGTCCCCTGGTTACCTCCCTCTTCTCTGAGCCAAAAGTGTCCAAGTTCCGGTCCAAATTCTCCTTCTTTGGGGAAGCATTCAAGGGAAGGAGATATGCTTAAACTGGATAATTTGGATAAAGAAGATTCACCGAGACCAAAAAATGGACGTGTTCTGGTTCCGAAAACCTTGAGAATAGATGATCCAAGTGATGCTGCAAAGAGTTCTATATGGGCAACCCTTGGGATTAAGAATGAAGCAGTGAATGGAGGTGGCATGTTTAAAGCTTTCCAGCCAAAGAGTGATGAAAAGAATCATGCCGAGGACGCCTCTCCAACGCTGAGGGCCAATCCAGCAGCCTTGTCTCGATCTCTTCATTTCAGAGAGAGTTCCTAA 1440 0.4403 MLEIKDPAIKLFGTKITLPADCEVQPISYDNSASTVANMDIQEEREKQRDIDIADKDSTSGKAAEAPSEHEDDLPENSDDTSNSEPLAEGTSDPKNVEEDAKEKSSKIKKEQNDSSNSQEKPLKKPDKLLPCPRCNSMDTKFCYYNNYNVNQRRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSALHYRHITISEAVEAARIDAMDGTHLPTLNANGRVLSFGLDAPICDSMAFVLNLTDKKVINGCRNGYHTFEEQRVPVPCRGKENRNGCSNASSVTVSTSTSTDGTAKKHSRESSFSAISGLPAQIPCLPGVPWSYPWNSAAPPPGLYPPGLPLPFYPAPLWNCGVPSNWNVPWLPPSSLSQKCPSSGPNSPSLGKHSREGDMLKLDNLDKEDSPRPKNGRVLVPKTLRIDDPSDAAKSSIWATLGIKNEAVNGGGMFKAFQPKSDEKNHAEDASPTLRANPAALSRSLHFRESS* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00946 479 MobiDBLite consensus disorder prediction 267 296 - -
Pte10g00946 479 MobiDBLite consensus disorder prediction 440 479 - -
Pte10g00946 479 MobiDBLite consensus disorder prediction 363 411 - -
Pte10g00946 479 MobiDBLite consensus disorder prediction 270 289 - -
Pte10g00946 479 MobiDBLite consensus disorder prediction 29 130 - -
Pte10g00946 479 Pfam Dof domain, zinc finger 128 184 IPR003851 GO:0003677|GO:0006355
Pte10g00946 479 MobiDBLite consensus disorder prediction 363 378 - -
Pte10g00946 479 ProSiteProfiles Zinc finger Dof-type profile. 130 184 IPR003851 GO:0003677|GO:0006355
Pte10g00946 479 MobiDBLite consensus disorder prediction 40 71 - -
Pte10g00946 479 ProSitePatterns Zinc finger Dof-type signature. 132 168 IPR003851 GO:0003677|GO:0006355
Pte10g00946 479 MobiDBLite consensus disorder prediction 92 128 - -
Pte10g00946 479 MobiDBLite consensus disorder prediction 382 403 - -
Pte10g00946 479 PANTHER CYCLIC DOF FACTOR 2 5 479 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00946 Pte-Chr10 22459454 22461854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00946 1 477 C2C2-Dof Transcription Factor Family AT3G47500 47.705 3.87e-119 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte10g00946 zf-Dof 1.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00946 - - qsa:O6P43_022858 604.749