Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01938 CTCCTATGAGATGCAAATCCACCATTGAGCCATGTTCCAACAATGGCTCATGCAATGCTCTTCTTGGCTACACACTTTACACTGACCTCAAGGTCTCTGAGGTTGCTTCTCTCTTCCAAATAGACCCTATGGCACTTCTCACTGCCAATGCCATTGACATCTCTTACCCTGATGTAGAGCACCATATTCTCCCTTCCAAACTCTTCCTTAAAGTCCCTATCACTTGTTCCTGTGTTGATGGGATTAGAAAGTCAGTGTCTACCCATTACAGGACTAGACCTTCTGATAATCTCTCTTCCATTGCAAATTCAATATATGGAGGTTTGGTTTCCCCTGATCAGCTTAGGGAGGCTAATTCCATAGCTGACCCTTCAGTGCTTGATGTTGGTCAGAACCTTTTGGTGCCCCTTCCATGCACTTGCTTCAATGAGAGTGATAACTCTTTGCCTTCAATTTACCTCTCCTATGTGGTTCAACCAATTGATACTTTGGCTGCAATTGCAGCTAGATATTTCACCACTCTTACTGATTTGATGAATGTCAATGACATGGGGACTACAACCATCTCTGATGGTGATATTCTTGCTGTTCCAATACCTGCTTGTGCATCAAAATTTCCAAATTATGCTTCTGATTTTGGCTTGCTTGTCCCTAATGGAAGTTATACCATTGCTGCTGGTCATTGTGTGCAATGTAGCTGTGGACCCCGAGATTTGAATTTATACTGTGTTCCCTCTTCTCTAGCTGTCTCTTGCTCTAGCATGCAATGCAAAAGCAGCAATCTTATGCTTGGGAATGTTACTGTGCACCAGAGTAGTTCTGGTTGCAAAGTTACCTCTTGCAACTATGATGGTTTTGTTAGTGACACCATAATAACCACGTTGTCCCTGTCTCTTCAGCCTCGATGTCCAGGATCACAACATCTCCCTCCACTCATACCACCACCAACATCTGTAACAAAGGAATCAGTGTTTGCCATTGCCCCATCACCGTTGTTGTTACCATCGTCATCATCATCACCATTGTTGTCATCCTTACCATCAGAAGGAACTGATCGAACAGCACCGGAATCTTCTGTCATGCCTGCAACGGGGTCATTTCCTAGATTCTCACATACAAATGGCCCTGATAGCAGGATTGCTTCTGCTGCTCCCTCTTTGGTGAATCCATTGCCCTTGATGTTCACATTTATGTTATTGCTTATAAAGTTGATGATCCCTGTGGCTTTG 1229 0.4378 MRCKSTIEPCSNNGSCNALLGYTLYTDLKVSEVASLFQIDPMALLTANAIDISYPDVEHHILPSKLFLKVPITCSCVDGIRKSVSTHYRTRPSDNLSSIANSIYGGLVSPDQLREANSIADPSVLDVGQNLLVPLPCTCFNESDNSLPSIYLSYVVQPIDTLAAIAARYFTTLTDLMNVNDMGTTTISDGDILAVPIPACASKFPNYASDFGLLVPNGSYTIAAGHCVQCSCGPRDLNLYCVPSSLAVSCSSMQCKSSNLMLGNVTVHQSSSGCKVTSCNYDGFVSDTIITTLSLSLQPRCPGSQHLPPLIPPPTSVTKESVFAIAPSPLLLPSSSSSPLLSSLPSEGTDRTAPESSVMPATGSFPRFSHTNGPDSRIASAAPSLVNPLPLMFTFMLLLIKLMIPVAL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01938 408 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 4 305 - -
Pste8g01938 408 CDD LysM 86 133 IPR018392 -
Pste8g01938 408 MobiDBLite consensus disorder prediction 335 370 - -
Pste8g01938 408 Pfam LysM domain 88 134 IPR018392 -
Pste8g01938 408 Pfam LysM domain 154 196 IPR018392 -
Pste8g01938 408 SUPERFAMILY LysM domain 152 197 IPR036779 -
Pste8g01938 408 Gene3D LysM domain 143 204 IPR036779 -
Pste8g01938 408 ProSiteProfiles LysM domain profile. 152 195 IPR018392 -
Pste8g01938 408 SMART LysM_2 153 196 IPR018392 -
Pste8g01938 408 SMART LysM_2 87 134 IPR018392 -
Pste8g01938 408 CDD LysM 153 195 IPR018392 -
Pste8g01938 408 ProSiteProfiles LysM domain profile. 86 133 IPR018392 -
Pste8g01938 408 Gene3D LysM domain 82 142 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01938 Pste-Chr8 14768174 14770841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01938 4 402 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 63.659 0.0 512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01938 8 14768174 14770841 Pste8g01938 8 14768174 14770841 ECH